BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00000603
         (397 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002887932.1| zinc finger family protein [Arabidopsis lyra...    79   5e-13
gb|AAG52446.1|AC010852_3 unknown protein; 23656-22633 [Arabidops...    77   1e-12
ref|NP_001185305.1| E3 ubiquitin ligase-like protein [Arabidopsi...    77   1e-12
ref|NP_176574.2| E3 ubiquitin ligase-like protein [Arabidopsis t...    77   1e-12
ref|XP_002274008.1| PREDICTED: mitochondrial ubiquitin ligase ac...    76   2e-12

>ref|XP_002887932.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]
           gi|297333773|gb|EFH64191.1| zinc finger family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 343

 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 41/96 (42%), Positives = 57/96 (59%), Gaps = 8/96 (8%)
 Frame = -3

Query: 374 VACCLAQVGLYYKGKSCEREGDVLKSVTRFKRVKDLAQFLDAESKXXXXXXXXXXXXXTD 195
           V CCL+   LY  G+S  R+ +VLK+VTR  ++K+LAQ L+ +SK             ++
Sbjct: 7   VTCCLSAAALYLLGRSSGRDAEVLKTVTRVNQLKELAQLLELDSKILPFIVAVSGRVGSE 66

Query: 194 TPIKCEHSGMRGVIWRQT--------DEDGSWNSES 111
           TPIKCEHSG+RGVI  +T        +E GSW  +S
Sbjct: 67  TPIKCEHSGIRGVIVEETAEQHFLKHNETGSWVQDS 102


>gb|AAG52446.1|AC010852_3 unknown protein; 23656-22633 [Arabidopsis thaliana]
          Length = 200

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 40/96 (41%), Positives = 57/96 (59%), Gaps = 8/96 (8%)
 Frame = -3

Query: 374 VACCLAQVGLYYKGKSCEREGDVLKSVTRFKRVKDLAQFLDAESKXXXXXXXXXXXXXTD 195
           V CCL+   LY  G+S  R+ +VL++VTR  ++K+LAQ L+ +SK             ++
Sbjct: 7   VTCCLSAAALYLLGRSSGRDAEVLETVTRVNQLKELAQLLELDSKILPFIVAVSGRVGSE 66

Query: 194 TPIKCEHSGMRGVIWRQT--------DEDGSWNSES 111
           TPIKCEHSG+RGVI  +T        +E GSW  +S
Sbjct: 67  TPIKCEHSGIRGVIVEETAEQHFLKHNETGSWVQDS 102


>ref|NP_001185305.1| E3 ubiquitin ligase-like protein [Arabidopsis thaliana]
           gi|332196044|gb|AEE34165.1| E3 ubiquitin ligase-like
           protein [Arabidopsis thaliana]
          Length = 347

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 40/96 (41%), Positives = 57/96 (59%), Gaps = 8/96 (8%)
 Frame = -3

Query: 374 VACCLAQVGLYYKGKSCEREGDVLKSVTRFKRVKDLAQFLDAESKXXXXXXXXXXXXXTD 195
           V CCL+   LY  G+S  R+ +VL++VTR  ++K+LAQ L+ +SK             ++
Sbjct: 7   VTCCLSAAALYLLGRSSGRDAEVLETVTRVNQLKELAQLLELDSKILPFIVAVSGRVGSE 66

Query: 194 TPIKCEHSGMRGVIWRQT--------DEDGSWNSES 111
           TPIKCEHSG+RGVI  +T        +E GSW  +S
Sbjct: 67  TPIKCEHSGIRGVIVEETAEQHFLKHNETGSWVQDS 102


>ref|NP_176574.2| E3 ubiquitin ligase-like protein [Arabidopsis thaliana]
           gi|22135946|gb|AAM91555.1| putative RING zinc finger
           protein [Arabidopsis thaliana]
           gi|23197600|gb|AAN15327.1| putative RING zinc finger
           protein [Arabidopsis thaliana]
           gi|51970568|dbj|BAD43976.1| unknown protein [Arabidopsis
           thaliana] gi|51971707|dbj|BAD44518.1| unknown protein
           [Arabidopsis thaliana] gi|332196043|gb|AEE34164.1| E3
           ubiquitin ligase-like protein [Arabidopsis thaliana]
          Length = 343

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 40/96 (41%), Positives = 57/96 (59%), Gaps = 8/96 (8%)
 Frame = -3

Query: 374 VACCLAQVGLYYKGKSCEREGDVLKSVTRFKRVKDLAQFLDAESKXXXXXXXXXXXXXTD 195
           V CCL+   LY  G+S  R+ +VL++VTR  ++K+LAQ L+ +SK             ++
Sbjct: 7   VTCCLSAAALYLLGRSSGRDAEVLETVTRVNQLKELAQLLELDSKILPFIVAVSGRVGSE 66

Query: 194 TPIKCEHSGMRGVIWRQT--------DEDGSWNSES 111
           TPIKCEHSG+RGVI  +T        +E GSW  +S
Sbjct: 67  TPIKCEHSGIRGVIVEETAEQHFLKHNETGSWVQDS 102


>ref|XP_002274008.1| PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1
           [Vitis vinifera] gi|296086688|emb|CBI32323.3| unnamed
           protein product [Vitis vinifera]
          Length = 343

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 40/96 (41%), Positives = 54/96 (56%), Gaps = 8/96 (8%)
 Frame = -3

Query: 374 VACCLAQVGLYYKGKSCEREGDVLKSVTRFKRVKDLAQFLDAESKXXXXXXXXXXXXXTD 195
           ++CCL+   LY  G+S  R+ + LKSVTR +++KDL Q LD   K             +D
Sbjct: 7   ISCCLSAAALYLLGRSSGRDAEALKSVTRVQQLKDLVQLLDTACKVLPLVVTVSGRVGSD 66

Query: 194 TPIKCEHSGMRGVIWRQTDED--------GSWNSES 111
           TPIKCE+SG+RGVI  +T E         GSW  +S
Sbjct: 67  TPIKCEYSGLRGVIVEETAEQHFLKHNDAGSWIQDS 102