BLASTX nr result
ID: Coptis23_contig00000418
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00000418
(1258 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002285419.1| PREDICTED: uncharacterized protein LOC100257... 258 3e-66
emb|CAN68016.1| hypothetical protein VITISV_025150 [Vitis vinifera] 257 5e-66
ref|XP_002528377.1| Heterogeneous nuclear ribonucleoprotein 27C,... 251 3e-64
ref|XP_004147161.1| PREDICTED: heterogeneous nuclear ribonucleop... 245 2e-62
ref|XP_003536257.1| PREDICTED: RNA-binding protein Musashi homol... 243 6e-62
>ref|XP_002285419.1| PREDICTED: uncharacterized protein LOC100257917 [Vitis vinifera]
Length = 464
Score = 258 bits (658), Expect = 3e-66
Identities = 160/360 (44%), Positives = 188/360 (52%), Gaps = 50/360 (13%)
Frame = -2
Query: 1257 HTIDGRTVEAKRALSREEQQTSYRSGARGGDRSFGSGGNLKTKKIFVGGLPPTLTEEGFR 1078
H IDGRTVEAKRALSREEQQTS R+G R+ G GGN+KTKKIFVGGLPPTL+EEGFR
Sbjct: 68 HIIDGRTVEAKRALSREEQQTSSRAGNFNSARNSGGGGNVKTKKIFVGGLPPTLSEEGFR 127
Query: 1077 QYFEAYGVVTDVVVMFDQNTQRPRGFGFITFDTEEAVDRVLHKSFHDLNGKNVEVKRALP 898
QYFEA+G VTDVVVM+DQ+TQRPRGFGF++FDTE+AVDRVL+K+FHDLNGK VEVKRALP
Sbjct: 128 QYFEAFGHVTDVVVMYDQSTQRPRGFGFVSFDTEDAVDRVLYKTFHDLNGKQVEVKRALP 187
Query: 897 KDAN-----XXXXXXXXXXXXXXXXXXSNAGN-GSYNSQMDGSRYMQPQATXXXXXXXXX 736
KDAN ++ GN +Y+ +MD +RYMQPQ T
Sbjct: 188 KDANPGGGSRSMGGGAGAVAGGYQGYGASGGNPTTYDGRMDSNRYMQPQNTGGGFPPYGS 247
Query: 735 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVQNASYGNDPPGS-KS 559
NV NA Y PPG+ +S
Sbjct: 248 SGYSAPGYGYGPANNGMGYGGYGGYGGANPGYGGPAGAPYGNPNVPNAGYAGGPPGAPRS 307
Query: 558 SWSGQAPSGYGSAPY----------------GGTGFAAPAQSPSGTAAYGNKEXXXXXXX 427
SW+ QAPSGYG Y GGTG A+ QSPSG A YGN+
Sbjct: 308 SWNSQAPSGYGGVGYGNAASWGSSAGGGAGSGGTGSASSGQSPSGAAGYGNQSYGYGGYG 367
Query: 426 XXXYENQN---------------SYNAG------------RGGHANNSGNSGYTSTAWSS 328
N + NAG GG+ + +GNSGY + AW S
Sbjct: 368 GSEGSYANPTGYGAVGGRTGSGPNSNAGGGELQGSGGGYMGGGYGDANGNSGYGNAAWKS 427
Score = 73.6 bits (179), Expect = 1e-10
Identities = 35/79 (44%), Positives = 53/79 (67%)
Frame = -2
Query: 1128 KIFVGGLPPTLTEEGFRQYFEAYGVVTDVVVMFDQNTQRPRGFGFITFDTEEAVDRVLHK 949
K+F+GG+ +E+ ++YF +YG V+ VVM D+ T RPRGFGF+ F +DRVL +
Sbjct: 7 KLFIGGISWETSEDKLKEYFGSYGEVSQAVVMRDKATGRPRGFGFVVFADPSILDRVLQE 66
Query: 948 SFHDLNGKNVEVKRALPKD 892
H ++G+ VE KRAL ++
Sbjct: 67 K-HIIDGRTVEAKRALSRE 84
>emb|CAN68016.1| hypothetical protein VITISV_025150 [Vitis vinifera]
Length = 464
Score = 257 bits (656), Expect = 5e-66
Identities = 159/360 (44%), Positives = 189/360 (52%), Gaps = 50/360 (13%)
Frame = -2
Query: 1257 HTIDGRTVEAKRALSREEQQTSYRSGARGGDRSFGSGGNLKTKKIFVGGLPPTLTEEGFR 1078
H IDGRTVEAKRALSREEQQTS R+G R+ G GGN+KTKKIFVGGLPPTL+EEGFR
Sbjct: 68 HIIDGRTVEAKRALSREEQQTSSRAGNFNSARNSGGGGNVKTKKIFVGGLPPTLSEEGFR 127
Query: 1077 QYFEAYGVVTDVVVMFDQNTQRPRGFGFITFDTEEAVDRVLHKSFHDLNGKNVEVKRALP 898
QYFEA+G VTDVVVM+DQ+TQRPRGFGF++FDTE+AVDRVL+K+FHDLNGK VEVKRALP
Sbjct: 128 QYFEAFGHVTDVVVMYDQSTQRPRGFGFVSFDTEDAVDRVLYKTFHDLNGKQVEVKRALP 187
Query: 897 KDAN-----XXXXXXXXXXXXXXXXXXSNAGN-GSYNSQMDGSRYMQPQATXXXXXXXXX 736
KDAN ++ GN +Y+ +MD +RYMQPQ T
Sbjct: 188 KDANPGGGSRSMGGGAGAVAGGYQGYGASGGNPTTYDGRMDSNRYMQPQNTGGGFPPYGS 247
Query: 735 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVQNASYGNDPPGS-KS 559
NV NA Y PPG+ +S
Sbjct: 248 SGYSAPGYGYGPANNGMGYGGYGGYGGANPGYGGPAGAPYGNPNVPNAGYAGGPPGAPRS 307
Query: 558 SWSGQAPSGYGSAPY----------------GGTGFAAPAQSPSGTAAYGNKEXXXXXXX 427
SW+ QAPSGYG+ Y GGTG A+ QSPSG A YGN+
Sbjct: 308 SWNSQAPSGYGAVGYGNAASWGPSAGGGAGSGGTGSASSGQSPSGAAGYGNQSYGYGGYG 367
Query: 426 XXXYENQN---------------SYNAG------------RGGHANNSGNSGYTSTAWSS 328
N + NAG GG+ + +GNSGY + +W S
Sbjct: 368 GSEGSYANPTGYGAVGGRTGSGPNSNAGGGELQGSGGGYMGGGYGDANGNSGYGNASWKS 427
Score = 73.6 bits (179), Expect = 1e-10
Identities = 35/79 (44%), Positives = 53/79 (67%)
Frame = -2
Query: 1128 KIFVGGLPPTLTEEGFRQYFEAYGVVTDVVVMFDQNTQRPRGFGFITFDTEEAVDRVLHK 949
K+F+GG+ +E+ ++YF +YG V+ VVM D+ T RPRGFGF+ F +DRVL +
Sbjct: 7 KLFIGGISWETSEDKLKEYFGSYGEVSQAVVMRDKATGRPRGFGFVVFADPSILDRVLQE 66
Query: 948 SFHDLNGKNVEVKRALPKD 892
H ++G+ VE KRAL ++
Sbjct: 67 K-HIIDGRTVEAKRALSRE 84
>ref|XP_002528377.1| Heterogeneous nuclear ribonucleoprotein 27C, putative [Ricinus
communis] gi|223532245|gb|EEF34049.1| Heterogeneous
nuclear ribonucleoprotein 27C, putative [Ricinus
communis]
Length = 470
Score = 251 bits (641), Expect = 3e-64
Identities = 157/365 (43%), Positives = 181/365 (49%), Gaps = 55/365 (15%)
Frame = -2
Query: 1257 HTIDGRTVEAKRALSREEQQTSYRSGARGGDRSFGSGGNLKTKKIFVGGLPPTLTEEGFR 1078
HTIDGRTVEAK+ALSREEQQT+ RSG R+ GSGGN++TKKIFVGGLPP LT++ FR
Sbjct: 68 HTIDGRTVEAKKALSREEQQTNARSGNLNPPRNSGSGGNIRTKKIFVGGLPPALTDDEFR 127
Query: 1077 QYFEAYGVVTDVVVMFDQNTQRPRGFGFITFDTEEAVDRVLHKSFHDLNGKNVEVKRALP 898
QYFEAYG+VTDVV+M+DQNTQRPRGFGFI+FD E+AVDRVLHK+FHDLNGK VEVKRALP
Sbjct: 128 QYFEAYGLVTDVVIMYDQNTQRPRGFGFISFDNEDAVDRVLHKTFHDLNGKQVEVKRALP 187
Query: 897 KDANXXXXXXXXXXXXXXXXXXSNAGNG------------SYNSQMDGSRYMQPQATXXX 754
KDAN G SY ++D +RYMQ Q T
Sbjct: 188 KDANPGGGNRSMGGGGNIGGGGGGGAGGYQGYGASGGNASSYEGRIDSNRYMQSQGTGGS 247
Query: 753 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVQNASYGNDP 574
V NA Y + P
Sbjct: 248 FPPYGSSGYSGPGYGYGPANNGVGYGGYGSYGGAGAGYGGPAGAAYGNPAVPNAGYASGP 307
Query: 573 PGS-KSSWSGQAPSGYGSAPY--------------GGTGFAAPAQSPSGTAAYGNKEXXX 439
PG+ +SSWS QAPSGYG+ Y GG G A QSPSG+A YGN+
Sbjct: 308 PGAPRSSWSSQAPSGYGAMGYGNAASWGANTGAGSGGPGSAPAGQSPSGSAGYGNQGYGY 367
Query: 438 XXXXXXXYE--NQNSYNA--GRGGHANNS------------------------GNSGYTS 343
N Y+A GR G A NS GN GY +
Sbjct: 368 GSYGGNDGSYGNPAGYSAVGGRSGGAPNSNVGAGGELQGSGGGYMGSDYGDANGNPGYGT 427
Query: 342 TAWSS 328
W S
Sbjct: 428 AGWRS 432
Score = 72.4 bits (176), Expect = 2e-10
Identities = 35/79 (44%), Positives = 49/79 (62%)
Frame = -2
Query: 1128 KIFVGGLPPTLTEEGFRQYFEAYGVVTDVVVMFDQNTQRPRGFGFITFDTEEAVDRVLHK 949
K+F+GG+ TE+ + YF YG V VVM D+ T RPRGFGF+ F +DRVL
Sbjct: 7 KLFIGGISWETTEDKLKDYFVQYGDVVQTVVMRDKTTGRPRGFGFVVFADPNILDRVLQD 66
Query: 948 SFHDLNGKNVEVKRALPKD 892
H ++G+ VE K+AL ++
Sbjct: 67 K-HTIDGRTVEAKKALSRE 84
>ref|XP_004147161.1| PREDICTED: heterogeneous nuclear ribonucleoprotein D-like [Cucumis
sativus]
Length = 462
Score = 245 bits (625), Expect = 2e-62
Identities = 149/330 (45%), Positives = 174/330 (52%), Gaps = 20/330 (6%)
Frame = -2
Query: 1257 HTIDGRTVEAKRALSREEQQTSYRSGARGGDRSFGSGG-NLKTKKIFVGGLPPTLTEEGF 1081
HTIDG+TVEAKRALSREEQQT R+ G S GSGG N++TKKIFVGGLPPTLTEEGF
Sbjct: 68 HTIDGKTVEAKRALSREEQQTPARASNSNGRNSGGSGGGNMRTKKIFVGGLPPTLTEEGF 127
Query: 1080 RQYFEAYGVVTDVVVMFDQNTQRPRGFGFITFDTEEAVDRVLHKSFHDLNGKNVEVKRAL 901
++YFEAYG VTDVVVM+DQNT+RPRGFGFI+FDTEEAVDRVLHK+FHDLNGK VEVKRAL
Sbjct: 128 KEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDLNGKQVEVKRAL 187
Query: 900 PKDANXXXXXXXXXXXXXXXXXXSNAGNG-----SYNSQMDGSRYMQPQATXXXXXXXXX 736
PKDAN +G SY+++MD +RYMQ Q +
Sbjct: 188 PKDANPGAGGRTMSGGAGSGGYQGYGSSGGVNSNSYDNRMDSNRYMQSQGSSGGFPPYGS 247
Query: 735 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVQNASYGNDPPGS-KS 559
NV NA YG+ P G ++
Sbjct: 248 SGYNNPAYGYGSSNNGMGYGGYGNYSGSNTGFGAPTAVAYGNPNVANAGYGSGPQGGPRN 307
Query: 558 SWSGQAPSGYGSAPYG-------------GTGFAAPAQSPSGTAAYGNKEXXXXXXXXXX 418
SWSGQAPSGYG+ YG G G P +P+G + G
Sbjct: 308 SWSGQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAAAGYGNQGYGYG 367
Query: 417 YENQNSYNAGRGGHANNSGNSGYTSTAWSS 328
Y G GG + SGY +T S
Sbjct: 368 GFGNQGYGYG-GGDGSYGSQSGYGTTGGRS 396
Score = 73.9 bits (180), Expect = 8e-11
Identities = 36/79 (45%), Positives = 49/79 (62%)
Frame = -2
Query: 1128 KIFVGGLPPTLTEEGFRQYFEAYGVVTDVVVMFDQNTQRPRGFGFITFDTEEAVDRVLHK 949
K+F+GG+ +E+ + YF YG V VVM D+ T RPRGFGF+ F +DRVL
Sbjct: 7 KLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVLDRVLQD 66
Query: 948 SFHDLNGKNVEVKRALPKD 892
H ++GK VE KRAL ++
Sbjct: 67 K-HTIDGKTVEAKRALSRE 84
>ref|XP_003536257.1| PREDICTED: RNA-binding protein Musashi homolog 1-like [Glycine max]
Length = 471
Score = 243 bits (621), Expect = 6e-62
Identities = 152/368 (41%), Positives = 178/368 (48%), Gaps = 58/368 (15%)
Frame = -2
Query: 1257 HTIDGRTVEAKRALSREEQQTSY--RSGARGGDRSFGSGGNLKTKKIFVGGLPPTLTEEG 1084
H IDGRTV+AK+A SRE+QQ S R G + G+GGN++TKKIFVGGLPPTLTEE
Sbjct: 68 HVIDGRTVDAKKAFSREDQQISVTSRGGNSNSGMNSGNGGNIRTKKIFVGGLPPTLTEEK 127
Query: 1083 FRQYFEAYGVVTDVVVMFDQNTQRPRGFGFITFDTEEAVDRVLHKSFHDLNGKNVEVKRA 904
FRQYFE+YG VTDVVVM+DQNT RPRGFGFI+FDTE+AVDRVLHKSFHDLNGK VEVKRA
Sbjct: 128 FRQYFESYGNVTDVVVMYDQNTGRPRGFGFISFDTEDAVDRVLHKSFHDLNGKQVEVKRA 187
Query: 903 LPKDANXXXXXXXXXXXXXXXXXXSNAGNG---SYNSQMDGSRYMQPQATXXXXXXXXXX 733
LPKDAN A G +Y+ +MD SRYMQPQ+
Sbjct: 188 LPKDANPGASGRMMGGAGGGGYQGYGASGGNQNAYDGRMDSSRYMQPQSAAGGFPPYGSS 247
Query: 732 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNVQNASYGNDPPGS-KSS 556
NV NA+Y PPG +S+
Sbjct: 248 AYSAPGYGYGPASNGIGYGAYGSYGGATAGYGGPAAATYGNPNVPNAAYAGGPPGGPRST 307
Query: 555 WSGQAPSGYGSAPY-----------------GGTGFAAPAQSPSGTAAYGNKEXXXXXXX 427
W QAPSGYGS Y GG G A QSP G A YGN+
Sbjct: 308 WPAQAPSGYGSMGYGNTAAWGAPSGGAGSGGGGPGSATAGQSPGGAAGYGNQGYGYGGYG 367
Query: 426 XXXYENQNSYNAGR-----------------------------------GGHANNSGNSG 352
+ + N+G GG+ + +GNSG
Sbjct: 368 GYGGSDSSYGNSGAYGTVGGRTGSAPNNNASASGGSELTSSGGSGNYMGGGYGDANGNSG 427
Query: 351 YTSTAWSS 328
Y + AW S
Sbjct: 428 YGNAAWRS 435
Score = 64.3 bits (155), Expect = 6e-08
Identities = 30/79 (37%), Positives = 49/79 (62%)
Frame = -2
Query: 1128 KIFVGGLPPTLTEEGFRQYFEAYGVVTDVVVMFDQNTQRPRGFGFITFDTEEAVDRVLHK 949
K+F+GG+ TE+ +++F YG V VM ++NT +PRGFGF+ F +DRVL
Sbjct: 7 KLFIGGISWDTTEDKLKEHFGNYGDVLSTSVMREKNTGKPRGFGFVVFADPNILDRVLED 66
Query: 948 SFHDLNGKNVEVKRALPKD 892
H ++G+ V+ K+A ++
Sbjct: 67 K-HVIDGRTVDAKKAFSRE 84