BLASTX nr result

ID: Coptis23_contig00000390 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00000390
         (744 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268250.1| PREDICTED: uncharacterized protein LOC100264...   109   1e-24
ref|XP_002320521.1| predicted protein [Populus trichocarpa] gi|2...   111   2e-23
ref|NP_001050596.1| Os03g0595300 [Oryza sativa Japonica Group] g...   113   5e-23
ref|XP_002530211.1| conserved hypothetical protein [Ricinus comm...   111   2e-22
ref|XP_003545445.1| PREDICTED: uncharacterized protein LOC100810...   108   9e-22

>ref|XP_002268250.1| PREDICTED: uncharacterized protein LOC100264834 [Vitis vinifera]
           gi|296085028|emb|CBI28443.3| unnamed protein product
           [Vitis vinifera]
          Length = 118

 Score =  109 bits (273), Expect(2) = 1e-24
 Identities = 47/57 (82%), Positives = 54/57 (94%)
 Frame = -3

Query: 466 FITREQEPEQYWRAAGEGKGENPMKTPLPYIILFGMSTPFVILALGFANGWIKVPIR 296
           FITRE+EPEQYW+ AGE +GENPMKTPLPYII+FGMSTPFVILA+ FANGW+KVP+R
Sbjct: 62  FITREEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWVKVPVR 118



 Score = 29.6 bits (65), Expect(2) = 1e-24
 Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
 Frame = -2

Query: 599 PCTLFYSPT--KRRSKSFKVHAQLGLDGNGLCRWGRWQYQRSREEE 468
           P +L ++PT  K+R+  F +HA+LG  G+G  + G  +   +REEE
Sbjct: 24  PSSLTHTPTSPKKRAHHFSIHAKLG-GGDGEIKQGGKKKFITREEE 68


>ref|XP_002320521.1| predicted protein [Populus trichocarpa] gi|222861294|gb|EEE98836.1|
           predicted protein [Populus trichocarpa]
          Length = 118

 Score =  111 bits (278), Expect(2) = 2e-23
 Identities = 49/57 (85%), Positives = 55/57 (96%)
 Frame = -3

Query: 466 FITREQEPEQYWRAAGEGKGENPMKTPLPYIILFGMSTPFVILALGFANGWIKVPIR 296
           FITREQEPEQYW++AGE +GENPMKTPLPYII+FGMSTPFVILA+ FANGWIKVP+R
Sbjct: 62  FITREQEPEQYWQSAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWIKVPVR 118



 Score = 23.5 bits (49), Expect(2) = 2e-23
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 581 SPTKRRSKSFKVHAQLGLDGNG 516
           S  K+R   FK+HA LG +G+G
Sbjct: 32  SSPKKRVHHFKIHANLG-EGDG 52


>ref|NP_001050596.1| Os03g0595300 [Oryza sativa Japonica Group]
           gi|28269464|gb|AAO38007.1| unknown protein [Oryza sativa
           Japonica Group] gi|108709639|gb|ABF97434.1| expressed
           protein [Oryza sativa Japonica Group]
           gi|113549067|dbj|BAF12510.1| Os03g0595300 [Oryza sativa
           Japonica Group] gi|215686889|dbj|BAG89739.1| unnamed
           protein product [Oryza sativa Japonica Group]
           gi|218193251|gb|EEC75678.1| hypothetical protein
           OsI_12483 [Oryza sativa Indica Group]
           gi|222625313|gb|EEE59445.1| hypothetical protein
           OsJ_11626 [Oryza sativa Japonica Group]
          Length = 118

 Score =  113 bits (282), Expect = 5e-23
 Identities = 50/57 (87%), Positives = 55/57 (96%)
 Frame = -3

Query: 466 FITREQEPEQYWRAAGEGKGENPMKTPLPYIILFGMSTPFVILALGFANGWIKVPIR 296
           FITRE+EPEQYW+AAGE KGENPMKTPLPYII+FGMSTPFVILA+ FANGWIKVP+R
Sbjct: 62  FITREEEPEQYWQAAGERKGENPMKTPLPYIIIFGMSTPFVILAIAFANGWIKVPVR 118


>ref|XP_002530211.1| conserved hypothetical protein [Ricinus communis]
           gi|223530258|gb|EEF32158.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 117

 Score =  111 bits (277), Expect(2) = 2e-22
 Identities = 49/57 (85%), Positives = 54/57 (94%)
 Frame = -3

Query: 466 FITREQEPEQYWRAAGEGKGENPMKTPLPYIILFGMSTPFVILALGFANGWIKVPIR 296
           FITREQEPEQYW+ AGE +GENPMKTPLPYII+FGMSTPFVILA+ FANGWIKVP+R
Sbjct: 61  FITREQEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWIKVPVR 117



 Score = 21.2 bits (43), Expect(2) = 2e-22
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 599 PCTLFYSPTKRRSKSFKVHAQLGLDG 522
           P +  +S  ++R + FK++A  G DG
Sbjct: 26  PLSCTFSTPRKRVQKFKINAIGGGDG 51


>ref|XP_003545445.1| PREDICTED: uncharacterized protein LOC100810445 [Glycine max]
          Length = 126

 Score =  108 bits (271), Expect = 9e-22
 Identities = 47/57 (82%), Positives = 54/57 (94%)
 Frame = -3

Query: 466 FITREQEPEQYWRAAGEGKGENPMKTPLPYIILFGMSTPFVILALGFANGWIKVPIR 296
           FITRE+EP+QYW+ AGE +GENPMKTPLPYII+FGMSTPFVILA+ FANGWIKVP+R
Sbjct: 70  FITREEEPQQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWIKVPVR 126


Top