BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00000373
         (1032 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAH03883.1| CDNA sequence BC003883 [Mus musculus]                  354   2e-95
ref|XP_002277445.2| PREDICTED: splicing factor U2af small subuni...   349   5e-94
ref|XP_003540217.1| PREDICTED: splicing factor U2af small subuni...   346   6e-93
gb|ABK24730.1| unknown [Picea sitchensis]                             335   1e-89
ref|XP_004143302.1| PREDICTED: splicing factor U2af small subuni...   333   3e-89

>gb|AAH03883.1| CDNA sequence BC003883 [Mus musculus]
          Length = 310

 Score =  354 bits (908), Expect = 2e-95
 Identities = 181/310 (58%), Positives = 202/310 (65%)
 Frame = +3

Query: 21  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMVTP 200
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLL+NMYQRPDM+TP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLANMYQRPDMITP 60

Query: 201 GMDPQGQAMDPRRIQXXXXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEE 380
           G+DPQGQ +DPR+IQ              SKYGEIESLNICDNLADHMVGNVYVQFREEE
Sbjct: 61  GVDPQGQPLDPRKIQQHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEE 120

Query: 381 HAAAAVQSLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKKISXXX 560
           HA  A+++L+GRFYAGRPIIVDFSPVTDFREATCRQYEEN CNRGGYCNFMHLKKIS   
Sbjct: 121 HAGEALRNLSGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180

Query: 561 XXXXXXXXXXXXXXXXXXXPHKNRNYEEXXXXXXXXXXXXXXXXXXXXNRVXXXXXXXXX 740
                              P  +R + +                    ++          
Sbjct: 181 RRQLFGRYRRRHSRSRSRSPQAHRGHGDRPHGGRGYGRRDDDRNQRYHDK--GRRPRSRS 238

Query: 741 XXXXXXXXXXXXXXXXPPARDGSAERRARIEQWNREKEQAESGNKNNDKHPSSDDYEKNG 920
                            P R+ S ERRA+I QWNREKEQA++G  NND +    D   NG
Sbjct: 239 PGHRGRSRSPPGRRDRSPVRENSEERRAKIAQWNREKEQADTG--NNDVNHDVTDNHANG 296

Query: 921 YSPNGEQFYD 950
           +  NGE +YD
Sbjct: 297 FQDNGEDYYD 306


>ref|XP_002277445.2| PREDICTED: splicing factor U2af small subunit B-like [Vitis vinifera]
          Length = 343

 Score =  349 bits (896), Expect = 5e-94
 Identities = 188/348 (54%), Positives = 210/348 (60%), Gaps = 18/348 (5%)
 Frame = +3

Query: 21   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMVTP 200
            MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMVTP
Sbjct: 1    MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMVTP 60

Query: 201  GMDPQGQAMDPRRIQXXXXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEE 380
            G+DPQGQ +DPR+IQ              SKYGEIESLNICDNLADHMVGNVYVQFREEE
Sbjct: 61   GVDPQGQPLDPRKIQEHFEDFYEDLFEELSKYGEIESLNICDNLADHMVGNVYVQFREEE 120

Query: 381  HAAAAVQSLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKKISXXX 560
            HAA A+++L GRFYAGRPIIVDFSPVTDFREATCRQYEEN CNRGGYCNFMHLKKIS   
Sbjct: 121  HAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENICNRGGYCNFMHLKKISREL 180

Query: 561  XXXXXXXXXXXXXXXXXXXPHKNRNYEEXXXXXXXXXXXXXXXXXXXXNRVXXXXXXXXX 740
                               P+++R +EE                                
Sbjct: 181  RRQLFGRNRRRRSRSRSRSPYRHRGHEEHPHGPHGPHGPHGPHGPRGPR---GSNRRDDD 237

Query: 741  XXXXXXXXXXXXXXXXPPARDGSAER------------------RARIEQWNREKEQAES 866
                             PAR G   R                  RA+IEQWNRE+EQAE+
Sbjct: 238  RDHRYHDRGGRRPRSRSPARRGGRSRSPGGRRNKSPVREGSAERRAKIEQWNREREQAEA 297

Query: 867  GNKNNDKHPSSDDYEKNGYSPNGEQFYDQNHHXXXXXXXXXXEGGYDY 1010
             NKN++ H S +    N +  + +Q+Y+  H            GGY+Y
Sbjct: 298  TNKNDNSH-SDNGNNNNDFEQDDQQYYNPQHQ-EEDQQQQQQHGGYNY 343


>ref|XP_003540217.1| PREDICTED: splicing factor U2af small subunit A-like [Glycine max]
          Length = 315

 Score =  346 bits (887), Expect = 6e-93
 Identities = 181/316 (57%), Positives = 199/316 (62%), Gaps = 9/316 (2%)
 Frame = +3

Query: 21  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMVTP 200
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPT+LLSNMYQRPDM+TP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDMITP 60

Query: 201 GMDPQGQAMDPRRIQXXXXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEE 380
           G+D  G  +DPR+IQ              SKYG+IESLN+CDNLADHMVGNVYVQFREEE
Sbjct: 61  GVDAHGHPIDPRKIQDHFEEFYEDLFDELSKYGDIESLNVCDNLADHMVGNVYVQFREEE 120

Query: 381 HAAAAVQSLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKKISXXX 560
           HAA AV++LTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLK+IS   
Sbjct: 121 HAANAVRNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISREL 180

Query: 561 XXXXXXXXXXXXXXXXXXXPHKNRNYEEXXXXXXXXXXXXXXXXXXXXNRVXXXXXXXXX 740
                              P+++R++EE                    +R          
Sbjct: 181 RRQLFGKSHGRHSRSRSRSPYRHRSHEERSHRSHSRKYDDRDHHHESRSR-RHRSTSPRH 239

Query: 741 XXXXXXXXXXXXXXXXPPARDGSAERRARIEQWNREKEQAESG---------NKNNDKHP 893
                            P RDGS ERRARIEQWNRE+E  E G         N N  KH 
Sbjct: 240 RRGRSRSRSPGGRRHHSPVRDGSEERRARIEQWNREREDQEPGYKVNAEEINNGNASKHH 299

Query: 894 SSDDYEKNGYSPNGEQ 941
                E+   SP   Q
Sbjct: 300 GHQQQEQEPQSPQEGQ 315


>gb|ABK24730.1| unknown [Picea sitchensis]
          Length = 312

 Score =  335 bits (858), Expect = 1e-89
 Identities = 180/318 (56%), Positives = 200/318 (62%), Gaps = 7/318 (2%)
 Frame = +3

Query: 21  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMVTP 200
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHT+P+ISPT+LLSNMYQRPDMVTP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTRPTISPTILLSNMYQRPDMVTP 60

Query: 201 GMDPQGQAMDPRRIQXXXXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEE 380
           GMD QG AMDPR+IQ               KYGE+ESLN+CDNLADHMVGNVYVQFREEE
Sbjct: 61  GMDIQGHAMDPRKIQEHFEDFYEDLFEELGKYGELESLNVCDNLADHMVGNVYVQFREEE 120

Query: 381 HAAAAVQSLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKKIS--- 551
            AA A++SL GRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKKIS   
Sbjct: 121 QAANALRSLQGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKKISREL 180

Query: 552 XXXXXXXXXXXXXXXXXXXXXXPH----KNRNYEEXXXXXXXXXXXXXXXXXXXXNRVXX 719
                                 PH    K+R++++                    +R   
Sbjct: 181 RRRLFGRYRRYSHSRSRSRSASPHKDHEKHRHHDDRPRHGGRGYDRRYDVDDRDGHRGRR 240

Query: 720 XXXXXXXXXXXXXXXXXXXXXXXPPARDGSAERRARIEQWNREKEQAESGNKNNDKHPSS 899
                                   P R+GSAERRA+IEQWNREKE   S    N  HP  
Sbjct: 241 TRSRSPGGHRRGRSRSHSPRRNRSPIREGSAERRAKIEQWNREKEAQASSTIAN--HP-- 296

Query: 900 DDYEKNGYSPNGEQFYDQ 953
              +  G   N + +YD+
Sbjct: 297 --MQNGGAYSNPQGYYDR 312


>ref|XP_004143302.1| PREDICTED: splicing factor U2af small subunit A-like [Cucumis
           sativus]
          Length = 317

 Score =  333 bits (855), Expect = 3e-89
 Identities = 173/295 (58%), Positives = 193/295 (65%), Gaps = 7/295 (2%)
 Frame = +3

Query: 21  MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMVTP 200
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDM+TP
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITP 60

Query: 201 GMDPQGQAMDPRRIQXXXXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEE 380
           G+DPQGQA+DPR++Q              SKYG++ESLNICDNLADHMVGNVYVQFREEE
Sbjct: 61  GVDPQGQALDPRKVQDHFEDFYEDLFEELSKYGDLESLNICDNLADHMVGNVYVQFREEE 120

Query: 381 HAAAAVQSLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKKIS--X 554
            AA A+ +L GRFYAGRPIIVDFSPVTDFREATCRQYEEN CNRGGYCNFMHLKKIS   
Sbjct: 121 QAANALHNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISREL 180

Query: 555 XXXXXXXXXXXXXXXXXXXXXPHKNRNYEE-----XXXXXXXXXXXXXXXXXXXXNRVXX 719
                                PHK+  YEE                         +R   
Sbjct: 181 RRRLFGRSRRRRSRSRSRSQSPHKHHGYEERSHGGGGGRGRGPSRRDGEKDPRYHDRSRR 240

Query: 720 XXXXXXXXXXXXXXXXXXXXXXXPPARDGSAERRARIEQWNREKEQAESGNKNND 884
                                  P  R+ SAERRA+IEQWNR++E+ ++G+ + D
Sbjct: 241 PRSRSPRHRGGRSRSPGGRRNRSP-VRESSAERRAKIEQWNRDREKEDNGSNHQD 294