BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00000303
         (975 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004143621.1| PREDICTED: mediator of RNA polymerase II tra...   292   e-107
ref|XP_004140765.1| PREDICTED: mediator of RNA polymerase II tra...   291   e-106
ref|XP_003634097.1| PREDICTED: rRNA 2'-O-methyltransferase fibri...   288   e-106
ref|XP_002271480.1| PREDICTED: rRNA 2'-O-methyltransferase fibri...   288   e-106
emb|CBI22679.3| unnamed protein product [Vitis vinifera]              288   e-106

>ref|XP_004143621.1| PREDICTED: mediator of RNA polymerase II transcription subunit
           36a-like [Cucumis sativus]
          Length = 280

 Score =  292 bits (748), Expect(2) = e-107
 Identities = 147/164 (89%), Positives = 156/164 (95%)
 Frame = -2

Query: 542 AKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLVNMAKKRTNIIPIIEDARHP 363
           A+VLYLGAASGTTVSHVSD+VGPTG+VYAVEFSHRSGRDLVNMAKKRTN+IPIIEDARHP
Sbjct: 118 ARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHP 177

Query: 362 AKYRMLVGMVDVIFSDVAQPDQARILALNASFFLKNGGNFVISIKANCIDSTIPAEHVFA 183
           AKYRMLVGMVDVIFSDVAQPDQARILALNAS+FLK GG+FVISIKANCIDST+PAE VFA
Sbjct: 178 AKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFA 237

Query: 182 SEVKKLQVDQFKPKEQVTLEPFERDHACVVGIYRDPNKKQKVAS 51
           SEV KL+ DQFKP EQVTLEPFERDHACVVGIYR P KKQK A+
Sbjct: 238 SEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAP-KKQKAAA 280



 Score =  122 bits (305), Expect(2) = e-107
 Identities = 54/64 (84%), Positives = 62/64 (96%)
 Frame = -3

Query: 832 MKGGSKVIVEPHRHQGVFIAKGKEDALVTKNLVPGEAVYGEKRVSVQSEDGTKIEYRVWN 653
           MKGGSKVIVEPHRH+G+FIAKGKEDALVTKN+V GE+VY EKR+S+Q+EDGTK+EYRVWN
Sbjct: 36  MKGGSKVIVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISIQNEDGTKVEYRVWN 95

Query: 652 PFRS 641
           PFRS
Sbjct: 96  PFRS 99


>ref|XP_004140765.1| PREDICTED: mediator of RNA polymerase II transcription subunit
           36a-like [Cucumis sativus]
           gi|449485505|ref|XP_004157191.1| PREDICTED: mediator of
           RNA polymerase II transcription subunit 36a-like
           [Cucumis sativus]
          Length = 309

 Score =  291 bits (744), Expect(2) = e-106
 Identities = 146/164 (89%), Positives = 156/164 (95%)
 Frame = -2

Query: 542 AKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLVNMAKKRTNIIPIIEDARHP 363
           A+VLYLGAASGTTVSHVSD+VGP+G+VYAVEFSHRSGRDLVNMAKKRTN+IPIIEDARHP
Sbjct: 145 ARVLYLGAASGTTVSHVSDVVGPSGIVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHP 204

Query: 362 AKYRMLVGMVDVIFSDVAQPDQARILALNASFFLKNGGNFVISIKANCIDSTIPAEHVFA 183
           AKYRMLVGMVDVIFSDVAQPDQARILALNAS+FLK GG+FVISIKANCIDST+PAE VFA
Sbjct: 205 AKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFA 264

Query: 182 SEVKKLQVDQFKPKEQVTLEPFERDHACVVGIYRDPNKKQKVAS 51
           SEV KL+ DQFKP EQVTLEPFERDHACVVGIYR P KKQK A+
Sbjct: 265 SEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAP-KKQKAAA 307



 Score =  122 bits (307), Expect(2) = e-106
 Identities = 56/64 (87%), Positives = 62/64 (96%)
 Frame = -3

Query: 832 MKGGSKVIVEPHRHQGVFIAKGKEDALVTKNLVPGEAVYGEKRVSVQSEDGTKIEYRVWN 653
           MKGGSKV+VEPHRH+G+FIAKGKEDALVTKN+V GE+VY EKRVSVQ+EDGTKIEYRVWN
Sbjct: 63  MKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVTGESVYNEKRVSVQNEDGTKIEYRVWN 122

Query: 652 PFRS 641
           PFRS
Sbjct: 123 PFRS 126


>ref|XP_003634097.1| PREDICTED: rRNA 2'-O-methyltransferase fibrillarin 2-like isoform 2
           [Vitis vinifera]
          Length = 316

 Score =  288 bits (738), Expect(2) = e-106
 Identities = 144/163 (88%), Positives = 152/163 (93%)
 Frame = -2

Query: 542 AKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLVNMAKKRTNIIPIIEDARHP 363
           A+VLYLGAASGTTVSHVSD+VGPTGVVYAVEFSHRSGRDLVNMAKKRTN+IPIIEDARHP
Sbjct: 154 ARVLYLGAASGTTVSHVSDVVGPTGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHP 213

Query: 362 AKYRMLVGMVDVIFSDVAQPDQARILALNASFFLKNGGNFVISIKANCIDSTIPAEHVFA 183
           AKYRMLVGMVDVIFSDVAQPDQARILALNAS+FLK GG+FVISIKANCIDST+PAE VFA
Sbjct: 214 AKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFA 273

Query: 182 SEVKKLQVDQFKPKEQVTLEPFERDHACVVGIYRDPNKKQKVA 54
            EVKKLQ D FKP EQVTLEPFERDHACVVG YR P K++  A
Sbjct: 274 QEVKKLQADMFKPSEQVTLEPFERDHACVVGGYRMPKKQKPTA 316



 Score =  124 bits (311), Expect(2) = e-106
 Identities = 56/64 (87%), Positives = 63/64 (98%)
 Frame = -3

Query: 832 MKGGSKVIVEPHRHQGVFIAKGKEDALVTKNLVPGEAVYGEKRVSVQSEDGTKIEYRVWN 653
           MKGGS+V+VEPHRH+GVFIAKGKEDALVTKN+VPGEAVY EKR+SVQ+EDG+KIEYRVWN
Sbjct: 72  MKGGSRVVVEPHRHEGVFIAKGKEDALVTKNMVPGEAVYNEKRISVQNEDGSKIEYRVWN 131

Query: 652 PFRS 641
           PFRS
Sbjct: 132 PFRS 135


>ref|XP_002271480.1| PREDICTED: rRNA 2'-O-methyltransferase fibrillarin 2-like isoform 1
           [Vitis vinifera]
          Length = 311

 Score =  288 bits (738), Expect(2) = e-106
 Identities = 144/163 (88%), Positives = 152/163 (93%)
 Frame = -2

Query: 542 AKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLVNMAKKRTNIIPIIEDARHP 363
           A+VLYLGAASGTTVSHVSD+VGPTGVVYAVEFSHRSGRDLVNMAKKRTN+IPIIEDARHP
Sbjct: 149 ARVLYLGAASGTTVSHVSDVVGPTGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHP 208

Query: 362 AKYRMLVGMVDVIFSDVAQPDQARILALNASFFLKNGGNFVISIKANCIDSTIPAEHVFA 183
           AKYRMLVGMVDVIFSDVAQPDQARILALNAS+FLK GG+FVISIKANCIDST+PAE VFA
Sbjct: 209 AKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFA 268

Query: 182 SEVKKLQVDQFKPKEQVTLEPFERDHACVVGIYRDPNKKQKVA 54
            EVKKLQ D FKP EQVTLEPFERDHACVVG YR P K++  A
Sbjct: 269 QEVKKLQADMFKPSEQVTLEPFERDHACVVGGYRMPKKQKPTA 311



 Score =  124 bits (311), Expect(2) = e-106
 Identities = 56/64 (87%), Positives = 63/64 (98%)
 Frame = -3

Query: 832 MKGGSKVIVEPHRHQGVFIAKGKEDALVTKNLVPGEAVYGEKRVSVQSEDGTKIEYRVWN 653
           MKGGS+V+VEPHRH+GVFIAKGKEDALVTKN+VPGEAVY EKR+SVQ+EDG+KIEYRVWN
Sbjct: 67  MKGGSRVVVEPHRHEGVFIAKGKEDALVTKNMVPGEAVYNEKRISVQNEDGSKIEYRVWN 126

Query: 652 PFRS 641
           PFRS
Sbjct: 127 PFRS 130


>emb|CBI22679.3| unnamed protein product [Vitis vinifera]
          Length = 245

 Score =  288 bits (738), Expect(2) = e-106
 Identities = 144/163 (88%), Positives = 152/163 (93%)
 Frame = -2

Query: 542 AKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLVNMAKKRTNIIPIIEDARHP 363
           A+VLYLGAASGTTVSHVSD+VGPTGVVYAVEFSHRSGRDLVNMAKKRTN+IPIIEDARHP
Sbjct: 83  ARVLYLGAASGTTVSHVSDVVGPTGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHP 142

Query: 362 AKYRMLVGMVDVIFSDVAQPDQARILALNASFFLKNGGNFVISIKANCIDSTIPAEHVFA 183
           AKYRMLVGMVDVIFSDVAQPDQARILALNAS+FLK GG+FVISIKANCIDST+PAE VFA
Sbjct: 143 AKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFA 202

Query: 182 SEVKKLQVDQFKPKEQVTLEPFERDHACVVGIYRDPNKKQKVA 54
            EVKKLQ D FKP EQVTLEPFERDHACVVG YR P K++  A
Sbjct: 203 QEVKKLQADMFKPSEQVTLEPFERDHACVVGGYRMPKKQKPTA 245



 Score =  124 bits (311), Expect(2) = e-106
 Identities = 56/64 (87%), Positives = 63/64 (98%)
 Frame = -3

Query: 832 MKGGSKVIVEPHRHQGVFIAKGKEDALVTKNLVPGEAVYGEKRVSVQSEDGTKIEYRVWN 653
           MKGGS+V+VEPHRH+GVFIAKGKEDALVTKN+VPGEAVY EKR+SVQ+EDG+KIEYRVWN
Sbjct: 1   MKGGSRVVVEPHRHEGVFIAKGKEDALVTKNMVPGEAVYNEKRISVQNEDGSKIEYRVWN 60

Query: 652 PFRS 641
           PFRS
Sbjct: 61  PFRS 64