BLASTX nr result
ID: Coptis23_contig00000288
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00000288
(2005 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002282485.1| PREDICTED: uncharacterized protein LOC100267... 134 1e-28
emb|CAN69897.1| hypothetical protein VITISV_032062 [Vitis vinifera] 134 1e-28
ref|XP_002523584.1| Splicing factor, arginine/serine-rich, putat... 124 7e-26
ref|XP_004166153.1| PREDICTED: uncharacterized LOC101227176 [Cuc... 118 7e-24
ref|XP_004149706.1| PREDICTED: uncharacterized protein LOC101213... 118 7e-24
>ref|XP_002282485.1| PREDICTED: uncharacterized protein LOC100267903 [Vitis vinifera]
gi|296082422|emb|CBI21427.3| unnamed protein product
[Vitis vinifera]
Length = 552
Score = 134 bits (336), Expect = 1e-28
Identities = 78/111 (70%), Positives = 84/111 (75%)
Frame = +3
Query: 1113 LYRPSTGRILEALHNDPASAVSLDQEKNSKLLKPSVSGSTSLGLAKLSKPTAIVGSSKPQ 1292
L RPS+GRILEALH DPAS +SLD+EK SK+LKPSVS TS L+KLSKPT I G K Q
Sbjct: 371 LNRPSSGRILEALHVDPASGISLDKEKQSKVLKPSVS--TSSALSKLSKPTTIGGPLK-Q 427
Query: 1293 QGEKKETPQERLKRIMSKQLNKQIKKDTAVEMAXXXXXXXXXXXXLAEMSK 1445
QGEKKE PQERLKRIMSKQLNKQIKKDTAVEMA LAE S+
Sbjct: 428 QGEKKERPQERLKRIMSKQLNKQIKKDTAVEMAKKREQERQRLEKLAETSR 478
Score = 107 bits (267), Expect = 1e-20
Identities = 53/78 (67%), Positives = 58/78 (74%)
Frame = +3
Query: 273 MDKIAKEFGVKRYSWLVYMDXXXXXXXXXXXXXXXGDPAIKKLSRKERRKASQIERDRDR 452
MD IAKEFGVKRY WLVYMD GDPAI+KLSRKERRKASQIER+R+R
Sbjct: 212 MDTIAKEFGVKRYGWLVYMDKKAKEEEKRQKEVIKGDPAIRKLSRKERRKASQIERERER 271
Query: 453 ETARVTGTRILRQDPYRE 506
E RVTGTR+L+ DPYRE
Sbjct: 272 EATRVTGTRMLQHDPYRE 289
Score = 85.9 bits (211), Expect = 4e-14
Identities = 39/52 (75%), Positives = 42/52 (80%)
Frame = +2
Query: 668 RGGHSDGHRSKSRAPKIEYITEFGGSADVNDQKLAGVSPPPSPPTQADVLNR 823
RGGH D HRSKS+ PKIEYITEFGGSAD +D K G SPPPSPP+ AD LNR
Sbjct: 322 RGGHDDVHRSKSKTPKIEYITEFGGSADGDDPKFEGFSPPPSPPSHADALNR 373
>emb|CAN69897.1| hypothetical protein VITISV_032062 [Vitis vinifera]
Length = 627
Score = 134 bits (336), Expect = 1e-28
Identities = 78/111 (70%), Positives = 84/111 (75%)
Frame = +3
Query: 1113 LYRPSTGRILEALHNDPASAVSLDQEKNSKLLKPSVSGSTSLGLAKLSKPTAIVGSSKPQ 1292
L RPS+GRILEALH DPAS +SLD+EK SK+LKPSVS TS L+KLSKPT I G K Q
Sbjct: 355 LNRPSSGRILEALHVDPASGISLDKEKQSKVLKPSVS--TSSALSKLSKPTTIGGPLK-Q 411
Query: 1293 QGEKKETPQERLKRIMSKQLNKQIKKDTAVEMAXXXXXXXXXXXXLAEMSK 1445
QGEKKE PQERLKRIMSKQLNKQIKKDTAVEMA LAE S+
Sbjct: 412 QGEKKERPQERLKRIMSKQLNKQIKKDTAVEMAKKREQERQRLEKLAETSR 462
Score = 107 bits (267), Expect = 1e-20
Identities = 53/78 (67%), Positives = 58/78 (74%)
Frame = +3
Query: 273 MDKIAKEFGVKRYSWLVYMDXXXXXXXXXXXXXXXGDPAIKKLSRKERRKASQIERDRDR 452
MD IAKEFGVKRY WLVYMD GDPAI+KLSRKERRKASQIER+R+R
Sbjct: 196 MDTIAKEFGVKRYGWLVYMDKKAKEEEKRQKEVIKGDPAIRKLSRKERRKASQIERERER 255
Query: 453 ETARVTGTRILRQDPYRE 506
E RVTGTR+L+ DPYRE
Sbjct: 256 EATRVTGTRMLQHDPYRE 273
Score = 85.9 bits (211), Expect = 4e-14
Identities = 39/52 (75%), Positives = 42/52 (80%)
Frame = +2
Query: 668 RGGHSDGHRSKSRAPKIEYITEFGGSADVNDQKLAGVSPPPSPPTQADVLNR 823
RGGH D HRSKS+ PKIEYITEFGGSAD +D K G SPPPSPP+ AD LNR
Sbjct: 306 RGGHDDVHRSKSKTPKIEYITEFGGSADGDDPKFEGFSPPPSPPSHADALNR 357
>ref|XP_002523584.1| Splicing factor, arginine/serine-rich, putative [Ricinus communis]
gi|223537146|gb|EEF38779.1| Splicing factor,
arginine/serine-rich, putative [Ricinus communis]
Length = 553
Score = 124 bits (312), Expect = 7e-26
Identities = 69/112 (61%), Positives = 84/112 (75%)
Frame = +3
Query: 1110 LLYRPSTGRILEALHNDPASAVSLDQEKNSKLLKPSVSGSTSLGLAKLSKPTAIVGSSKP 1289
+L RP +GRILEALH DPAS V+LD++K++K++KP+VS TS L+KL+K +A G SK
Sbjct: 374 MLSRPYSGRILEALHVDPASGVTLDKDKSTKVVKPAVS--TSSALSKLTKASASGGPSKQ 431
Query: 1290 QQGEKKETPQERLKRIMSKQLNKQIKKDTAVEMAXXXXXXXXXXXXLAEMSK 1445
Q GEKKETPQERLKRIMSKQLNKQIKKDTA EMA LAE ++
Sbjct: 432 QPGEKKETPQERLKRIMSKQLNKQIKKDTAAEMAKKREQERQRLEKLAETNR 483
Score = 109 bits (272), Expect = 3e-21
Identities = 53/79 (67%), Positives = 59/79 (74%)
Frame = +3
Query: 273 MDKIAKEFGVKRYSWLVYMDXXXXXXXXXXXXXXXGDPAIKKLSRKERRKASQIERDRDR 452
MD IAKEFGVKRY WLVYMD GDPAI+KLSRKERRKASQIER+R+R
Sbjct: 215 MDMIAKEFGVKRYGWLVYMDKKAKEEEKRQKEIIKGDPAIRKLSRKERRKASQIERERER 274
Query: 453 ETARVTGTRILRQDPYRES 509
E AR+TGTR+L DPYRE+
Sbjct: 275 EAARITGTRVLHHDPYREA 293
Score = 78.6 bits (192), Expect = 6e-12
Identities = 39/55 (70%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
Frame = +2
Query: 662 HDRGGHSDG-HRSKSRAPKIEYITEFGGSADVNDQKLAGVSPPPSPPTQADVLNR 823
+ RGGHSD HRSKSR PKIEYITEFG S D + KL G SPPPSPP QAD+L+R
Sbjct: 323 YGRGGHSDEVHRSKSRTPKIEYITEFGSSGDGDKLKLEGYSPPPSPPFQADMLSR 377
>ref|XP_004166153.1| PREDICTED: uncharacterized LOC101227176 [Cucumis sativus]
Length = 294
Score = 118 bits (295), Expect = 7e-24
Identities = 69/112 (61%), Positives = 82/112 (73%)
Frame = +3
Query: 1110 LLYRPSTGRILEALHNDPASAVSLDQEKNSKLLKPSVSGSTSLGLAKLSKPTAIVGSSKP 1289
++ RPS+GRILEALH DPAS V+LD+EK+S+ +KPSVS TS LAKL+K ++ G K
Sbjct: 104 MINRPSSGRILEALHIDPASGVTLDKEKSSRAVKPSVS--TSSALAKLTKASSSGGPLK- 160
Query: 1290 QQGEKKETPQERLKRIMSKQLNKQIKKDTAVEMAXXXXXXXXXXXXLAEMSK 1445
GEKKETPQERLKRIMS+QLNKQIKKDTA EMA LAE S+
Sbjct: 161 -LGEKKETPQERLKRIMSQQLNKQIKKDTAAEMAKKREQERQRLEKLAETSR 211
Score = 70.1 bits (170), Expect = 2e-09
Identities = 30/54 (55%), Positives = 39/54 (72%)
Frame = +2
Query: 662 HDRGGHSDGHRSKSRAPKIEYITEFGGSADVNDQKLAGVSPPPSPPTQADVLNR 823
H G D HRSK + PKIE+ITEFGGS + + +L G+SPP SPP+Q D++NR
Sbjct: 54 HSHGHFDDVHRSKPKTPKIEFITEFGGSGESKEPRLEGLSPPQSPPSQPDMINR 107
>ref|XP_004149706.1| PREDICTED: uncharacterized protein LOC101213620 [Cucumis sativus]
Length = 557
Score = 118 bits (295), Expect = 7e-24
Identities = 69/112 (61%), Positives = 82/112 (73%)
Frame = +3
Query: 1110 LLYRPSTGRILEALHNDPASAVSLDQEKNSKLLKPSVSGSTSLGLAKLSKPTAIVGSSKP 1289
++ RPS+GRILEALH DPAS V+LD+EK+S+ +KPSVS TS LAKL+K ++ G K
Sbjct: 371 MINRPSSGRILEALHIDPASGVTLDKEKSSRAVKPSVS--TSSALAKLTKASSSGGPLK- 427
Query: 1290 QQGEKKETPQERLKRIMSKQLNKQIKKDTAVEMAXXXXXXXXXXXXLAEMSK 1445
GEKKETPQERLKRIMS+QLNKQIKKDTA EMA LAE S+
Sbjct: 428 -LGEKKETPQERLKRIMSQQLNKQIKKDTAAEMAKKREQERQRLEKLAETSR 478
Score = 107 bits (267), Expect = 1e-20
Identities = 52/79 (65%), Positives = 59/79 (74%)
Frame = +3
Query: 273 MDKIAKEFGVKRYSWLVYMDXXXXXXXXXXXXXXXGDPAIKKLSRKERRKASQIERDRDR 452
M+ IAKEFGVKRY WLVYMD GDPAI+KLSRKERRKASQ+ER+R+R
Sbjct: 215 MEVIAKEFGVKRYGWLVYMDKKAKEEEKRQKEIIKGDPAIRKLSRKERRKASQMERERER 274
Query: 453 ETARVTGTRILRQDPYRES 509
E AR+TGTR+L DPYRES
Sbjct: 275 EAARITGTRVLHHDPYRES 293
Score = 70.1 bits (170), Expect = 2e-09
Identities = 30/54 (55%), Positives = 39/54 (72%)
Frame = +2
Query: 662 HDRGGHSDGHRSKSRAPKIEYITEFGGSADVNDQKLAGVSPPPSPPTQADVLNR 823
H G D HRSK + PKIE+ITEFGGS + + +L G+SPP SPP+Q D++NR
Sbjct: 321 HSHGHFDDVHRSKPKTPKIEFITEFGGSGESKEPRLEGLSPPQSPPSQPDMINR 374