BLASTX nr result
ID: Coptis23_contig00000255
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00000255
(1874 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003633801.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 796 0.0
ref|XP_002273908.2| PREDICTED: DEAD-box ATP-dependent RNA helica... 796 0.0
ref|XP_002300045.1| predicted protein [Populus trichocarpa] gi|2... 783 0.0
ref|XP_004164821.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 782 0.0
ref|XP_004141097.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP... 780 0.0
>ref|XP_003633801.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 46-like isoform 2
[Vitis vinifera]
Length = 828
Score = 796 bits (2055), Expect = 0.0
Identities = 411/570 (72%), Positives = 457/570 (80%), Gaps = 5/570 (0%)
Frame = -1
Query: 1703 SASPSGPQYAPEDPSLPKPWKGLVDGKTGYLYFWNPDTNVTQYERPVASSGHRGAS---- 1536
+A+ +GP+YAPEDP+LPKPWKGLVDGKTGYLYFWNP+TNVTQYERP AS
Sbjct: 2 AATATGPRYAPEDPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERPERPGASSNASLAPP 61
Query: 1535 PIRAKSGSVPIXXXXXXXXXXXXXXXVEEDVRHNGDVHGRPKLAPIPTXXXXXXXXXSIG 1356
P + S S + EED ++N
Sbjct: 62 PKSSASISSSVQVQQSSQGQRRDHGLNEEDDKYNR------------ARNLQQSARGGTV 109
Query: 1355 HLDDVPNGASGGRLHSSHVLKTSAKALGSDVGISSSAESYRRQHEITVNGDDVPPPFTSF 1176
H D PNG G S V + GS +S ESYRR+HEITV GDDVP PFTSF
Sbjct: 110 HSHDPPNGIVGAGHGGSSVRGQGSSGPGS----GASTESYRRRHEITVTGDDVPQPFTSF 165
Query: 1175 ESTGFPSEILREVHNAGFSAPTPIQAQSWPVALQSRDIVAIAKTGSGKTLGYLIPGFIHL 996
ESTGFP EI+REV++AGFSAPTPIQAQSWPVALQSRDIVAIAKTGSGKTLGYLIPGFIHL
Sbjct: 166 ESTGFPPEIIREVYSAGFSAPTPIQAQSWPVALQSRDIVAIAKTGSGKTLGYLIPGFIHL 225
Query: 995 KRSRNNSQLGPTVLVLSPTRELATQIQAEAVKFSKSSRISCTCLYGGAPKGPQLRDIERG 816
KR RNN Q+GPTVLVLSPTRELATQIQ EAVKF +SSR+SCTCLYGGAPKGPQLRD++RG
Sbjct: 226 KRIRNNPQMGPTVLVLSPTRELATQIQDEAVKFGRSSRLSCTCLYGGAPKGPQLRDLDRG 285
Query: 815 VDIVVATPGRLNDILEMRKISLRQVSYLVLDEADRMLDMGFEPQIRKIVQEIPPRRQTLM 636
DIVVATPGRLNDILEMR++SLRQVSYLVLDEADRMLDMGFEPQIRKIV+E+P RRQTLM
Sbjct: 286 ADIVVATPGRLNDILEMRRVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLM 345
Query: 635 YTATWPKEVRKIAADLLVNPVQVNIGSIDELVANKSITQYIEVVTPMEKNRRLEQILRSQ 456
YTATWPKEVRKIAADLLVNPVQVNIG++DELVANK+ITQY+EV+ MEK++RLEQILRSQ
Sbjct: 346 YTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKAITQYVEVLPYMEKHKRLEQILRSQ 405
Query: 455 EPGSKVLVFCSTKKMCDQLTRTITRQFGAAAIHGDKSQGERDYVLNQFRSGKSPILVATD 276
EPGSK+++FCSTKKMCDQL R +TR FGAAAIHGDKSQGERDYVLNQFR+G+SP+LVATD
Sbjct: 406 EPGSKIIIFCSTKKMCDQLARNLTRPFGAAAIHGDKSQGERDYVLNQFRTGRSPVLVATD 465
Query: 275 VAARGLDIKDIRVVINFDFPTGIEDYVHRIXXXXXXXXXGLAYTFFCEQDAKYAADLIKV 96
VAARGLDIKDIRVVIN+DFPTG+EDYVHRI G+AYTFF EQDAKYA+DL+KV
Sbjct: 466 VAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFAEQDAKYASDLVKV 525
Query: 95 LEGANQRVPPQIREMASR-GGFGRSRPRWG 9
LEGANQRVPP+IR+MASR GG GRSR RWG
Sbjct: 526 LEGANQRVPPEIRDMASRGGGMGRSR-RWG 554
>ref|XP_002273908.2| PREDICTED: DEAD-box ATP-dependent RNA helicase 46-like isoform 1
[Vitis vinifera]
Length = 863
Score = 796 bits (2055), Expect = 0.0
Identities = 411/570 (72%), Positives = 457/570 (80%), Gaps = 5/570 (0%)
Frame = -1
Query: 1703 SASPSGPQYAPEDPSLPKPWKGLVDGKTGYLYFWNPDTNVTQYERPVASSGHRGAS---- 1536
+A+ +GP+YAPEDP+LPKPWKGLVDGKTGYLYFWNP+TNVTQYERP AS
Sbjct: 2 AATATGPRYAPEDPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERPERPGASSNASLAPP 61
Query: 1535 PIRAKSGSVPIXXXXXXXXXXXXXXXVEEDVRHNGDVHGRPKLAPIPTXXXXXXXXXSIG 1356
P + S S + EED ++N
Sbjct: 62 PKSSASISSSVQVQQSSQGQRRDHGLNEEDDKYNR------------ARNLQQSARGGTV 109
Query: 1355 HLDDVPNGASGGRLHSSHVLKTSAKALGSDVGISSSAESYRRQHEITVNGDDVPPPFTSF 1176
H D PNG G S V + GS +S ESYRR+HEITV GDDVP PFTSF
Sbjct: 110 HSHDPPNGIVGAGHGGSSVRGQGSSGPGS----GASTESYRRRHEITVTGDDVPQPFTSF 165
Query: 1175 ESTGFPSEILREVHNAGFSAPTPIQAQSWPVALQSRDIVAIAKTGSGKTLGYLIPGFIHL 996
ESTGFP EI+REV++AGFSAPTPIQAQSWPVALQSRDIVAIAKTGSGKTLGYLIPGFIHL
Sbjct: 166 ESTGFPPEIIREVYSAGFSAPTPIQAQSWPVALQSRDIVAIAKTGSGKTLGYLIPGFIHL 225
Query: 995 KRSRNNSQLGPTVLVLSPTRELATQIQAEAVKFSKSSRISCTCLYGGAPKGPQLRDIERG 816
KR RNN Q+GPTVLVLSPTRELATQIQ EAVKF +SSR+SCTCLYGGAPKGPQLRD++RG
Sbjct: 226 KRIRNNPQMGPTVLVLSPTRELATQIQDEAVKFGRSSRLSCTCLYGGAPKGPQLRDLDRG 285
Query: 815 VDIVVATPGRLNDILEMRKISLRQVSYLVLDEADRMLDMGFEPQIRKIVQEIPPRRQTLM 636
DIVVATPGRLNDILEMR++SLRQVSYLVLDEADRMLDMGFEPQIRKIV+E+P RRQTLM
Sbjct: 286 ADIVVATPGRLNDILEMRRVSLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLM 345
Query: 635 YTATWPKEVRKIAADLLVNPVQVNIGSIDELVANKSITQYIEVVTPMEKNRRLEQILRSQ 456
YTATWPKEVRKIAADLLVNPVQVNIG++DELVANK+ITQY+EV+ MEK++RLEQILRSQ
Sbjct: 346 YTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKAITQYVEVLPYMEKHKRLEQILRSQ 405
Query: 455 EPGSKVLVFCSTKKMCDQLTRTITRQFGAAAIHGDKSQGERDYVLNQFRSGKSPILVATD 276
EPGSK+++FCSTKKMCDQL R +TR FGAAAIHGDKSQGERDYVLNQFR+G+SP+LVATD
Sbjct: 406 EPGSKIIIFCSTKKMCDQLARNLTRPFGAAAIHGDKSQGERDYVLNQFRTGRSPVLVATD 465
Query: 275 VAARGLDIKDIRVVINFDFPTGIEDYVHRIXXXXXXXXXGLAYTFFCEQDAKYAADLIKV 96
VAARGLDIKDIRVVIN+DFPTG+EDYVHRI G+AYTFF EQDAKYA+DL+KV
Sbjct: 466 VAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAYTFFAEQDAKYASDLVKV 525
Query: 95 LEGANQRVPPQIREMASR-GGFGRSRPRWG 9
LEGANQRVPP+IR+MASR GG GRSR RWG
Sbjct: 526 LEGANQRVPPEIRDMASRGGGMGRSR-RWG 554
>ref|XP_002300045.1| predicted protein [Populus trichocarpa] gi|222847303|gb|EEE84850.1|
predicted protein [Populus trichocarpa]
Length = 791
Score = 783 bits (2023), Expect = 0.0
Identities = 408/590 (69%), Positives = 464/590 (78%), Gaps = 20/590 (3%)
Frame = -1
Query: 1718 MAETASASPSGPQYAPEDPSLPKPWKGLVDGKTGYLYFWNPDTNVTQYERP--------- 1566
MA TA+AS GP+YAPEDP+LPKPW+GLVDGKTGYLYFWNP+TNVTQYERP
Sbjct: 1 MAATATASSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPTLPKSVSSL 60
Query: 1565 -------VASSGHRGASPIRAKSGSVPIXXXXXXXXXXXXXXXVEEDVRHN--GDVHGRP 1413
V S HRG +P V+ED R+ + +P
Sbjct: 61 PITSSVQVHQSSHRGYNP------------------------SVKEDDRYGRANNAGSKP 96
Query: 1412 KLAPIPTXXXXXXXXXSIGHLDDVPNGASGGRLHSSHVLKTSAKALGSDVGISS-SAESY 1236
+ ++VPNG + G SA+ GS G S S E+Y
Sbjct: 97 DAVTRSISSSNQSARGAAIQSENVPNGTANG---------LSARVYGSSAGGSGMSGEAY 147
Query: 1235 RRQHEITVNGDDVPPPFTSFESTGFPSEILREVHNAGFSAPTPIQAQSWPVALQSRDIVA 1056
RR+HEITV GD+VPPP TSFE+TGFPSEIL+EV NAGFSAPTPIQAQSWP+ALQSRDIVA
Sbjct: 148 RRRHEITVTGDEVPPPLTSFETTGFPSEILKEVLNAGFSAPTPIQAQSWPIALQSRDIVA 207
Query: 1055 IAKTGSGKTLGYLIPGFIHLKRSRNNSQLGPTVLVLSPTRELATQIQAEAVKFSKSSRIS 876
+AKTGSGKTLGYLIPGFIHLKRS N+ +LGPTVLVLSPTRELATQIQ EAVKF KSSR S
Sbjct: 208 VAKTGSGKTLGYLIPGFIHLKRSCNDPRLGPTVLVLSPTRELATQIQVEAVKFGKSSRFS 267
Query: 875 CTCLYGGAPKGPQLRDIERGVDIVVATPGRLNDILEMRKISLRQVSYLVLDEADRMLDMG 696
CTCLYGGAPKGPQL++++RG DIVVATPGRLNDILEMR++SL QVSYLVLDEADRMLDMG
Sbjct: 268 CTCLYGGAPKGPQLKELDRGADIVVATPGRLNDILEMRRVSLSQVSYLVLDEADRMLDMG 327
Query: 695 FEPQIRKIVQEIPPRRQTLMYTATWPKEVRKIAADLLVNPVQVNIGSIDELVANKSITQY 516
FEPQIRKIV+E+P RRQTLMYTATWPKEVRKIAADLLVNPVQVNIG++DELVANKSITQY
Sbjct: 328 FEPQIRKIVKEVPARRQTLMYTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQY 387
Query: 515 IEVVTPMEKNRRLEQILRSQEPGSKVLVFCSTKKMCDQLTRTITRQFGAAAIHGDKSQGE 336
+E++ P+EK+RRLEQILRSQE GSK+++FCSTKKMCDQL+R +TRQFGAAAIHGDKSQ E
Sbjct: 388 VELLAPLEKHRRLEQILRSQESGSKIIIFCSTKKMCDQLSRNLTRQFGAAAIHGDKSQSE 447
Query: 335 RDYVLNQFRSGKSPILVATDVAARGLDIKDIRVVINFDFPTGIEDYVHRIXXXXXXXXXG 156
RDYVL+QFR+G+SPILVATDVAARGLDIKDIRVVIN+DFPTG+EDYVHRI G
Sbjct: 448 RDYVLSQFRTGRSPILVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATG 507
Query: 155 LAYTFFCEQDAKYAADLIKVLEGANQRVPPQIREMASRGGFGRSR-PRWG 9
+AYTFF +QDAK+A+DLIKVLEGANQ+VPP+IR+MASRGG G R RWG
Sbjct: 508 VAYTFFGDQDAKHASDLIKVLEGANQQVPPEIRDMASRGGGGMGRFRRWG 557
>ref|XP_004164821.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 46-like [Cucumis
sativus]
Length = 778
Score = 782 bits (2020), Expect = 0.0
Identities = 408/571 (71%), Positives = 459/571 (80%), Gaps = 1/571 (0%)
Frame = -1
Query: 1718 MAETASASPSGPQYAPEDPSLPKPWKGLVDGKTGYLYFWNPDTNVTQYERPVASSGHRGA 1539
MA TA+A GP+YAPEDP+LPKPW+GLVDGKTGYLYFWNP+TNVTQYERPVA++
Sbjct: 1 MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLN-- 58
Query: 1538 SPIRAKSGSVPIXXXXXXXXXXXXXXXVEEDVRHNGDVHGRPKLAPIPTXXXXXXXXXSI 1359
S I + S SV I ++ N D +GR AP
Sbjct: 59 SSIVSISSSVQIQKPSSGHSY-------NNNLNENNDKYGRGSHAPKQEVARGETFQSH- 110
Query: 1358 GHLDDVPNGASGGRLHSSHVLKTSAKALGSDVGISSSAESYRRQHEITVNGDDVPPPFTS 1179
+ PN GG H SD G SAESYR++HEIT +GD+VP PF+S
Sbjct: 111 DTSNGTPNTGHGGAPLKGH--------RPSDAGNGISAESYRQRHEITFSGDNVPAPFSS 162
Query: 1178 FESTGFPSEILREVHNAGFSAPTPIQAQSWPVALQSRDIVAIAKTGSGKTLGYLIPGFIH 999
FE+TGFP EILREVHNAGFSAPTPIQAQSWP+ALQSRDIVAIAKTGSGKTLGYLIPGFIH
Sbjct: 163 FEATGFPPEILREVHNAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPGFIH 222
Query: 998 LKRSRNNSQLGPTVLVLSPTRELATQIQAEAVKFSKSSRISCTCLYGGAPKGPQLRDIER 819
LKR RN+ +LGPTVLVLSPTRELATQIQ EAVKF KSSRISC CLYGGAPKG QLRDI+R
Sbjct: 223 LKRIRNDPKLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCACLYGGAPKGLQLRDIDR 282
Query: 818 GVDIVVATPGRLNDILEMRKISLRQVSYLVLDEADRMLDMGFEPQIRKIVQEIPPRRQTL 639
GVDIVVATPGRLNDILEMR+ISL QVSYLVLDEADRMLDMGFEPQIRKIV+E+P RRQTL
Sbjct: 283 GVDIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTL 342
Query: 638 MYTATWPKEVRKIAADLLVNPVQVNIGSIDELVANKSITQYIEVVTPMEKNRRLEQILRS 459
MYTATWPKEVRKIA+DLLVNP+QVNIG++DELVANKSITQ+IE + P+EK+RRLEQILRS
Sbjct: 343 MYTATWPKEVRKIASDLLVNPIQVNIGNVDELVANKSITQHIEALAPLEKHRRLEQILRS 402
Query: 458 QEPGSKVLVFCSTKKMCDQLTRTITRQFGAAAIHGDKSQGERDYVLNQFRSGKSPILVAT 279
QEPGSKV++FCSTKKMCDQL R +TRQFGAAAIHGDKSQGERD+VL QFR+G++P+LVAT
Sbjct: 403 QEPGSKVIIFCSTKKMCDQLARNLTRQFGAAAIHGDKSQGERDHVLGQFRTGRTPVLVAT 462
Query: 278 DVAARGLDIKDIRVVINFDFPTGIEDYVHRIXXXXXXXXXGLAYTFFCEQDAKYAADLIK 99
DVAARGLDIKDIRVVIN+DFP+G+EDYVHRI G+AYTFF EQDAKYA+DLIK
Sbjct: 463 DVAARGLDIKDIRVVINYDFPSGVEDYVHRIGRTGRAGATGIAYTFFGEQDAKYASDLIK 522
Query: 98 VLEGANQRVPPQIREMASRG-GFGRSRPRWG 9
+LEGANQRVPP++R+MASR G + R RWG
Sbjct: 523 ILEGANQRVPPELRDMASRSYGMAKFR-RWG 552
>ref|XP_004141097.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
46-like [Cucumis sativus]
Length = 785
Score = 780 bits (2014), Expect = 0.0
Identities = 409/577 (70%), Positives = 461/577 (79%), Gaps = 7/577 (1%)
Frame = -1
Query: 1718 MAETASASPSGPQYAPEDPSLPKPWKGLVDGKTGYLYFWNPDTNVTQYERPVASSGHRGA 1539
MA TA+A GP+YAPEDP+LPKPW+GLVDGKTGYLYFWNP+TNVTQYERPVA++
Sbjct: 1 MAATATAVSVGPRYAPEDPTLPKPWRGLVDGKTGYLYFWNPETNVTQYERPVAAAPLN-- 58
Query: 1538 SPIRAKSGSVPIXXXXXXXXXXXXXXXVEEDVRHNGDVHGRPKLAP---IPTXXXXXXXX 1368
S I + S SV I ++ N D +GR AP +
Sbjct: 59 SSIVSISSSVQIQKPSSGHSY-------NNNLNENNDKYGRGSHAPKQEVEXKIQIVARG 111
Query: 1367 XSIGHLDD---VPNGASGGRLHSSHVLKTSAKALGSDVGISSSAESYRRQHEITVNGDDV 1197
+ D PN GG H SD G SAESYR++HEIT +GD+V
Sbjct: 112 ETFQSHDTSNGTPNTGHGGAPLKGH--------RPSDAGNGISAESYRQRHEITFSGDNV 163
Query: 1196 PPPFTSFESTGFPSEILREVHNAGFSAPTPIQAQSWPVALQSRDIVAIAKTGSGKTLGYL 1017
P PF+SFE+TGFP EILREVHNAGFSAPTPIQAQSWP+ALQSRDIVAIAKTGSGKTLGYL
Sbjct: 164 PAPFSSFEATGFPPEILREVHNAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYL 223
Query: 1016 IPGFIHLKRSRNNSQLGPTVLVLSPTRELATQIQAEAVKFSKSSRISCTCLYGGAPKGPQ 837
IPGFIHLKR RN+ +LGPTVLVLSPTRELATQIQ EAVKF KSSRISC CLYGGAPKG Q
Sbjct: 224 IPGFIHLKRIRNDPKLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCACLYGGAPKGLQ 283
Query: 836 LRDIERGVDIVVATPGRLNDILEMRKISLRQVSYLVLDEADRMLDMGFEPQIRKIVQEIP 657
LRDI+RGVDIVVATPGRLNDILEMR+ISL QVSYLVLDEADRMLDMGFEPQIRKIV+E+P
Sbjct: 284 LRDIDRGVDIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVKEVP 343
Query: 656 PRRQTLMYTATWPKEVRKIAADLLVNPVQVNIGSIDELVANKSITQYIEVVTPMEKNRRL 477
RRQTLMYTATWPKEVRKIA+DLLVNP+QVNIG++DELVANKSITQ+IE + P+EK+RRL
Sbjct: 344 ARRQTLMYTATWPKEVRKIASDLLVNPIQVNIGNVDELVANKSITQHIEALAPLEKHRRL 403
Query: 476 EQILRSQEPGSKVLVFCSTKKMCDQLTRTITRQFGAAAIHGDKSQGERDYVLNQFRSGKS 297
EQILRSQEPGSKV++FCSTKKMCDQL R +TRQFGAAAIHGDKSQGERD+VL QFR+G++
Sbjct: 404 EQILRSQEPGSKVIIFCSTKKMCDQLARNLTRQFGAAAIHGDKSQGERDHVLGQFRTGRT 463
Query: 296 PILVATDVAARGLDIKDIRVVINFDFPTGIEDYVHRIXXXXXXXXXGLAYTFFCEQDAKY 117
P+LVATDVAARGLDIKDIRVVIN+DFP+G+EDYVHRI G+AYTFF EQDAKY
Sbjct: 464 PVLVATDVAARGLDIKDIRVVINYDFPSGVEDYVHRIGRTGRAGATGIAYTFFGEQDAKY 523
Query: 116 AADLIKVLEGANQRVPPQIREMASRG-GFGRSRPRWG 9
A+DLIK+LEGANQRVPP++R+MASR G + R RWG
Sbjct: 524 ASDLIKILEGANQRVPPELRDMASRSYGMAKFR-RWG 559