BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00041347
         (290 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...    74   2e-11
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal...    72   6e-11
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...    67   1e-09
emb|CAB72467.1| putative protein [Arabidopsis thaliana]                67   1e-09
gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thali...    67   2e-09

>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 32/91 (35%), Positives = 50/91 (54%)
 Frame = -2

Query: 289  WNQAAYCGLIFKVVTKGDSLWVQWTWAQHIKNKFFWTMHVPKDCSWVWRNILESRVIARK 110
            WN+     LI+ +  + DSLWV W  A  +++  FW        SW+W+ IL  R +A++
Sbjct: 874  WNKTLNLRLIWMLFARRDSLWVAWNHANRLRHVNFWNAEAASHHSWIWKAILGLRPLAKR 933

Query: 109  FIRHSIANGDDTFLWHDIWCSEIPLIEDLEA 17
            F+R ++ NG     W+D W +  PLIE + A
Sbjct: 934  FLRGAVGNGQLLSYWYDHWSNLGPLIEAIGA 964


>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
           gi|7267919|emb|CAB78261.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 662

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 32/88 (36%), Positives = 49/88 (55%)
 Frame = -2

Query: 286 NQAAYCGLIFKVVTKGDSLWVQWTWAQHIKNKFFWTMHVPKDCSWVWRNILESRVIARKF 107
           N      LI+++V++GDSLWVQW     +K   FW+       SW+W+ +L+ R  A+ F
Sbjct: 401 NDVCCLKLIWRIVSQGDSLWVQWIRTYLLKRNTFWSFRSASQGSWMWKKLLKYRDTAKAF 460

Query: 106 IRHSIANGDDTFLWHDIWCSEIPLIEDL 23
            +  I NG+    W+D W S+  LI+ L
Sbjct: 461 SKVDIRNGETASFWYDDWSSKGRLIDVL 488


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1216

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
 Frame = -2

Query: 286 NQAAYCGLIFKVVTKGDSLWVQWTWAQHIKNKFFWTMHVPKDC-SWVWRNILESRVIARK 110
           N+ +   LI+++++  DSLWV+WT    +K + FW++       SW+WR +L+ R +A+ 
Sbjct: 604 NKVSSLKLIWRLLSCQDSLWVKWTRMNLLKKESFWSIGTHSTLGSWIWRRLLKHREVAKS 663

Query: 109 FIRHSIANGDDTFLWHDIWCSEIPLI 32
           F +  + NG +T  W D W  + PLI
Sbjct: 664 FCKIEVNNGVNTSFWFDNWSEKGPLI 689


>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
          Length = 762

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
 Frame = -2

Query: 286 NQAAYCGLIFKVVTKGDSLWVQWTWAQHIKNKFFWTMHVPKDC-SWVWRNILESRVIARK 110
           N      L++++++ GDSLWV+W     +K + FW +    +  SW+W+ IL+ R +A++
Sbjct: 436 NDVCCLKLVWRIISHGDSLWVKWVEHNLLKREIFWIVKENANLGSWIWKKILKYRGVAKR 495

Query: 109 FIRHSIANGDDTFLWHDIW 53
           F +  + NG+ T  W D W
Sbjct: 496 FCKAEVGNGESTSFWFDDW 514


>gb|AAG51098.1|AC025295_6 hypothetical protein [Arabidopsis thaliana]
          Length = 504

 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
 Frame = -2

Query: 286 NQAAYCGLIFKVVTKGDSLWVQWTWAQHIKNKFFWTMHVPKDC-SWVWRNILESRVIARK 110
           N      LI+++++  DSLWV+W  +  +K  FFW +       SW+WR IL+ R IAR 
Sbjct: 213 NDVCCLKLIWRIISHADSLWVKWIQSSLLKKVFFWAVRENTSLGSWMWRKILKFRDIART 272

Query: 109 FIRHSIANGDDTFLWHDIWCSEIPLIE 29
             +  I NG  T  W+D W     LIE
Sbjct: 273 LCKVEINNGAQTSFWYDDWSDLGRLIE 299