BLASTX nr result
ID: Coptis21_contig00041317
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00041317 (217 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBI30147.3| unnamed protein product [Vitis vinifera] 103 1e-20 ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containi... 103 1e-20 ref|XP_003541414.1| PREDICTED: pentatricopeptide repeat-containi... 84 9e-15 ref|XP_003628879.1| Pentatricopeptide repeat-containing protein ... 80 1e-13 ref|XP_002300388.1| predicted protein [Populus trichocarpa] gi|2... 79 5e-13 >emb|CBI30147.3| unnamed protein product [Vitis vinifera] Length = 538 Score = 103 bits (257), Expect = 1e-20 Identities = 48/71 (67%), Positives = 59/71 (83%) Frame = -2 Query: 216 GARYVVLSNMLTDANRWEDAGRVRKLMEAKGISKPRGWSCIEANGTLHRFQASDKSHPQT 37 GARYV+LSN+L DAN+WE+A +VRK+ME GI KP GWS IE G +HRF ASDKSHPQ Sbjct: 338 GARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQG 397 Query: 36 KEIDIMLEDIA 4 KEI++ML+D+A Sbjct: 398 KEIELMLKDMA 408 >ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Vitis vinifera] Length = 722 Score = 103 bits (257), Expect = 1e-20 Identities = 48/71 (67%), Positives = 59/71 (83%) Frame = -2 Query: 216 GARYVVLSNMLTDANRWEDAGRVRKLMEAKGISKPRGWSCIEANGTLHRFQASDKSHPQT 37 GARYV+LSN+L DAN+WE+A +VRK+ME GI KP GWS IE G +HRF ASDKSHPQ Sbjct: 553 GARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQG 612 Query: 36 KEIDIMLEDIA 4 KEI++ML+D+A Sbjct: 613 KEIELMLKDMA 623 >ref|XP_003541414.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Glycine max] Length = 613 Score = 84.3 bits (207), Expect = 9e-15 Identities = 39/70 (55%), Positives = 51/70 (72%) Frame = -2 Query: 216 GARYVVLSNMLTDANRWEDAGRVRKLMEAKGISKPRGWSCIEANGTLHRFQASDKSHPQT 37 GARYV+LSNMLT ++ ++A VR+ ++ GI KP GWS +E NGTLH+F A DKSHP+ Sbjct: 523 GARYVMLSNMLTLMDKHDEAASVRRAIDNVGIQKPPGWSHVEMNGTLHKFLAGDKSHPEA 582 Query: 36 KEIDIMLEDI 7 K + ML DI Sbjct: 583 KATEFMLRDI 592 >ref|XP_003628879.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355522901|gb|AET03355.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] Length = 633 Score = 80.5 bits (197), Expect = 1e-13 Identities = 36/70 (51%), Positives = 51/70 (72%) Frame = -2 Query: 216 GARYVVLSNMLTDANRWEDAGRVRKLMEAKGISKPRGWSCIEANGTLHRFQASDKSHPQT 37 GA YV+LSNML+D ++ ++A +RK ++ GI KP GWS +E N +LH+F A DKSHP+ Sbjct: 562 GAGYVMLSNMLSDTDQHDEAASLRKAIDNVGIQKPPGWSYVEMNRSLHKFLAGDKSHPEA 621 Query: 36 KEIDIMLEDI 7 K ++ML DI Sbjct: 622 KTTELMLRDI 631 >ref|XP_002300388.1| predicted protein [Populus trichocarpa] gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa] Length = 514 Score = 78.6 bits (192), Expect = 5e-13 Identities = 33/60 (55%), Positives = 44/60 (73%) Frame = -2 Query: 207 YVVLSNMLTDANRWEDAGRVRKLMEAKGISKPRGWSCIEANGTLHRFQASDKSHPQTKEI 28 YVV+SN+ +A RWEDA RVRKLM+ +G+ K GWS I NG +H F A D++HPQ ++I Sbjct: 348 YVVISNIYAEAERWEDAARVRKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQAEDI 407