BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00041255
         (304 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...    58   9e-07
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...    56   3e-06
gb|ABD96948.1| hypothetical protein [Cleome spinosa]                   55   6e-06
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    55   8e-06

>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 31/101 (30%), Positives = 50/101 (49%)
 Frame = +2

Query: 2    NDVLIFIRGREDSIVALKFILDEFSRATXXXXXXXXXXXXXXXXTQNDSTHLAQIIGMQP 181
            +D+++F  G   SI     I ++F+  +                + N  T + Q    + 
Sbjct: 852  DDIMVFSDGTSKSIQGTLAIFEKFAAMSWLKISLEKSTIFMAGISPNAKTSILQQFPFEL 911

Query: 182  ISPPIKYLGLPIVFARISTKDCLPLVEKTSTKIENWKNRFL 304
             + P+KYLGLP++  R++  D LPLVEK   +I +W NRFL
Sbjct: 912  GTLPVKYLGLPLLTKRMTQSDYLPLVEKIRARITSWTNRFL 952


>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 28/101 (27%), Positives = 49/101 (48%)
 Frame = +2

Query: 2    NDVLIFIRGREDSIVALKFILDEFSRATXXXXXXXXXXXXXXXXTQNDSTHLAQIIGMQP 181
            +D+++F  G   S+  +  I  +F+  +                +      +        
Sbjct: 960  DDIMVFSAGSAHSLEGVLAIFKDFAAFSGLNISLEKSTLFMASISSETCASILARFPFDS 1019

Query: 182  ISPPIKYLGLPIVFARISTKDCLPLVEKTSTKIENWKNRFL 304
             S P++YLGLP++  R++  DCLPL+EK  ++I +WKNRFL
Sbjct: 1020 GSLPVRYLGLPLMTKRMTLADCLPLLEKIRSRISSWKNRFL 1060


>gb|ABD96948.1| hypothetical protein [Cleome spinosa]
          Length = 539

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 28/101 (27%), Positives = 50/101 (49%)
 Frame = +2

Query: 2   NDVLIFIRGREDSIVALKFILDEFSRATXXXXXXXXXXXXXXXXTQNDSTHLAQIIGMQP 181
           +D++IF  G   S++ +K  LD FSRA+                   +++ L  +IG   
Sbjct: 152 DDIMIFTSGETRSLLEVKNTLDSFSRASGLYLNTEKTEIFLRGLNGTEASTLCAVIGFTR 211

Query: 182 ISPPIKYLGLPIVFARISTKDCLPLVEKTSTKIENWKNRFL 304
              P++YLG+ +   R++  D  PL+++   KI +W  R+L
Sbjct: 212 GYLPVRYLGVSLSPVRLTKSDYQPLLDRVKAKINSWTTRYL 252


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 28/101 (27%), Positives = 50/101 (49%)
 Frame = +2

Query: 2    NDVLIFIRGREDSIVALKFILDEFSRATXXXXXXXXXXXXXXXXTQNDSTHLAQIIGMQP 181
            +D+++   G+  SI  +  + DEF++ +                +      +A       
Sbjct: 705  DDLMVLSDGKIRSIERIIKVFDEFAKWSGLRISLEKSTVYLAGLSATARNEVADRFPFSS 764

Query: 182  ISPPIKYLGLPIVFARISTKDCLPLVEKTSTKIENWKNRFL 304
               P++YLGLP++  R+ST DCLPL+E+   +I +W +RFL
Sbjct: 765  GQLPVRYLGLPLITKRLSTTDCLPLLEQVRKRIGSWTSRFL 805