BLASTX nr result
ID: Coptis21_contig00041222
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00041222 (302 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa] 122 3e-26 emb|CCH50966.1| T4.5 [Malus x robusta] 113 1e-23 gb|ABA94310.1| retrotransposon protein, putative, Ty3-gypsy subc... 111 7e-23 emb|CAN81140.1| hypothetical protein VITISV_007978 [Vitis vinifera] 110 9e-23 emb|CAN68364.1| hypothetical protein VITISV_021899 [Vitis vinifera] 110 9e-23 >gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa] Length = 1384 Score = 122 bits (306), Expect = 3e-26 Identities = 59/100 (59%), Positives = 74/100 (74%) Frame = -3 Query: 300 AAEIYWTCILLNDLKIPLEKPPLLWCDNISAISLSNNPIFHARTKHVEVDYHYVRELVTN 121 AAE+ W L DL + L P + WCDNIS+ISL++NP+FH+RTKH+EVDYHYVR+ V Sbjct: 1271 AAELSWLRSLFRDLNVFLSCPRI-WCDNISSISLASNPVFHSRTKHIEVDYHYVRDKVVR 1329 Query: 120 KLLDIKYVCTQDQTADVFTKGLATTRFQELITKLSVRTSP 1 + L + YV T DQTAD+FTKGL+T RFQ L +KL VR P Sbjct: 1330 QELAVSYVSTADQTADIFTKGLSTQRFQFLASKLPVRARP 1369 >emb|CCH50966.1| T4.5 [Malus x robusta] Length = 1670 Score = 113 bits (283), Expect = 1e-23 Identities = 53/98 (54%), Positives = 72/98 (73%) Frame = -3 Query: 300 AAEIYWTCILLNDLKIPLEKPPLLWCDNISAISLSNNPIFHARTKHVEVDYHYVRELVTN 121 AAEI W C +L+D+ PL K P+++CDN S I+L+ NP+FHARTKHVE+DYHY+RE V Sbjct: 1553 AAEITWVCKILHDISFPLLKTPVIYCDNKSVIALAFNPVFHARTKHVEIDYHYIREKVLL 1612 Query: 120 KLLDIKYVCTQDQTADVFTKGLATTRFQELITKLSVRT 7 + +++V + Q AD+FTK LA RF L +KLSVR+ Sbjct: 1613 GHIGVQHVASLLQIADIFTKPLAADRFAALTSKLSVRS 1650 >gb|ABA94310.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group] Length = 1762 Score = 111 bits (277), Expect = 7e-23 Identities = 46/95 (48%), Positives = 71/95 (74%) Frame = -3 Query: 297 AEIYWTCILLNDLKIPLEKPPLLWCDNISAISLSNNPIFHARTKHVEVDYHYVRELVTNK 118 AE+ W +L +L + +++ P+LWCDN+ A LS+NP+FHARTKH+E+DYH+V+E V NK Sbjct: 1665 AELIWVRSVLEELGVKIDQSPVLWCDNLGATYLSSNPVFHARTKHIEIDYHFVQERVANK 1724 Query: 117 LLDIKYVCTQDQTADVFTKGLATTRFQELITKLSV 13 +LDI+++ T+DQ AD FTK L+T + + L++ Sbjct: 1725 MLDIRFIGTKDQIADGFTKALSTQNLRHFMYNLNL 1759 >emb|CAN81140.1| hypothetical protein VITISV_007978 [Vitis vinifera] Length = 791 Score = 110 bits (276), Expect = 9e-23 Identities = 49/99 (49%), Positives = 74/99 (74%) Frame = -3 Query: 297 AEIYWTCILLNDLKIPLEKPPLLWCDNISAISLSNNPIFHARTKHVEVDYHYVRELVTNK 118 AE+YW +LL +L+I L+ PP++WCDNISA++L++NPIFHAR+KH++VDYH+V E V ++ Sbjct: 674 AEVYWLRMLLCELEISLDSPPVIWCDNISALALASNPIFHARSKHIKVDYHFVHEKVAHQ 733 Query: 117 LLDIKYVCTQDQTADVFTKGLATTRFQELITKLSVRTSP 1 + ++++ T Q AD+FTKG RF L KL++ P Sbjct: 734 DIILEHISTSIQPADIFTKGHTVDRFCFLRDKLAIYDLP 772 >emb|CAN68364.1| hypothetical protein VITISV_021899 [Vitis vinifera] Length = 431 Score = 110 bits (276), Expect = 9e-23 Identities = 51/100 (51%), Positives = 72/100 (72%) Frame = -3 Query: 300 AAEIYWTCILLNDLKIPLEKPPLLWCDNISAISLSNNPIFHARTKHVEVDYHYVRELVTN 121 AAE+ W LL +L IPL +PP+L+CDN+S L+ NPI H+R KHVE+DYH+VRE V Sbjct: 222 AAELTWIQSLLKELFIPLFQPPVLYCDNLSTTYLAANPILHSRAKHVEIDYHFVRERVLQ 281 Query: 120 KLLDIKYVCTQDQTADVFTKGLATTRFQELITKLSVRTSP 1 K LD++++ ++DQ AD+ TK L+T F L +KL+V + P Sbjct: 282 KTLDVRFLPSEDQVADILTKSLSTQHFLHLRSKLTVLSRP 321