BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00041213
         (336 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_199236.1| pentatricopeptide repeat-containing protein [Ar...    62   1e-14
ref|XP_002865376.1| pentatricopeptide repeat-containing protein ...    62   4e-14
ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat...    60   6e-14
emb|CBI30347.3| unnamed protein product [Vitis vinifera]               60   6e-14
ref|XP_002442156.1| hypothetical protein SORBIDRAFT_08g015260 [S...    61   6e-14

>ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g44230 gi|9759524|dbj|BAB10990.1| selenium-binding
           protein-like [Arabidopsis thaliana]
           gi|91806984|gb|ABE66219.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
           gi|332007694|gb|AED95077.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score = 62.4 bits (150), Expect(2) = 1e-14
 Identities = 33/76 (43%), Positives = 47/76 (61%)
 Frame = +1

Query: 1   LVAPYSGTAVQGC*VQDATMQVLRMTEDYGVERSVDHCGRLVDLLGREGHVEEACDLVRN 180
           +   +SG   QG  V D+      M + +GV+ + DH   +VDLLGR G ++EA +L++ 
Sbjct: 393 MACSHSGLVDQGRQVFDS------MYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKT 446

Query: 181 MKVQPHVGVWGALLAA 228
           M V+PH GVWGALL A
Sbjct: 447 MSVEPHGGVWGALLGA 462



 Score = 41.6 bits (96), Expect(2) = 1e-14
 Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 5/42 (11%)
 Frame = +3

Query: 225 GIWGS-----GVYHNVEIGKIAAEKLFIMEPENRGNYAILSN 335
           G+WG+      +++N EI +IAAE LF +EP+  GNY +LSN
Sbjct: 454 GVWGALLGACRIHNNPEIAEIAAEHLFELEPDIIGNYILLSN 495


>ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297311211|gb|EFH41635.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 658

 Score = 62.0 bits (149), Expect(2) = 4e-14
 Identities = 28/52 (53%), Positives = 38/52 (73%)
 Frame = +1

Query: 73  MTEDYGVERSVDHCGRLVDLLGREGHVEEACDLVRNMKVQPHVGVWGALLAA 228
           M + +GVE + DH   +VDLLGR G ++EA +L++ M V+PH GVWGALL A
Sbjct: 412 MYQTFGVEPTRDHYTCMVDLLGRAGRLQEALELIKTMSVEPHGGVWGALLGA 463



 Score = 40.4 bits (93), Expect(2) = 4e-14
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 5/42 (11%)
 Frame = +3

Query: 225 GIWGS-----GVYHNVEIGKIAAEKLFIMEPENRGNYAILSN 335
           G+WG+      +++N +I +IAAE LF +EP+  GNY +LSN
Sbjct: 455 GVWGALLGACRIHNNPDIAEIAAEHLFELEPDIIGNYILLSN 496


>ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570 [Vitis vinifera]
          Length = 561

 Score = 60.5 bits (145), Expect(2) = 6e-14
 Identities = 27/52 (51%), Positives = 36/52 (69%)
 Frame = +1

Query: 73  MTEDYGVERSVDHCGRLVDLLGREGHVEEACDLVRNMKVQPHVGVWGALLAA 228
           M  DY +  S DH   +VDLLGR G ++EA +L+++M V+PH G WGALL A
Sbjct: 445 MKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGA 496



 Score = 41.6 bits (96), Expect(2) = 6e-14
 Identities = 17/42 (40%), Positives = 30/42 (71%), Gaps = 5/42 (11%)
 Frame = +3

Query: 225 GIWGS-----GVYHNVEIGKIAAEKLFIMEPENRGNYAILSN 335
           G WG+      ++ ++E+G++ A++LF +EP+N GNY +LSN
Sbjct: 488 GAWGALLGACKLHCDIELGEVVADQLFELEPQNAGNYVLLSN 529


>emb|CBI30347.3| unnamed protein product [Vitis vinifera]
          Length = 560

 Score = 60.5 bits (145), Expect(2) = 6e-14
 Identities = 27/52 (51%), Positives = 36/52 (69%)
 Frame = +1

Query: 73  MTEDYGVERSVDHCGRLVDLLGREGHVEEACDLVRNMKVQPHVGVWGALLAA 228
           M  DY +  S DH   +VDLLGR G ++EA +L+++M V+PH G WGALL A
Sbjct: 444 MKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGA 495



 Score = 41.6 bits (96), Expect(2) = 6e-14
 Identities = 17/42 (40%), Positives = 30/42 (71%), Gaps = 5/42 (11%)
 Frame = +3

Query: 225 GIWGS-----GVYHNVEIGKIAAEKLFIMEPENRGNYAILSN 335
           G WG+      ++ ++E+G++ A++LF +EP+N GNY +LSN
Sbjct: 487 GAWGALLGACKLHCDIELGEVVADQLFELEPQNAGNYVLLSN 528


>ref|XP_002442156.1| hypothetical protein SORBIDRAFT_08g015260 [Sorghum bicolor]
           gi|241942849|gb|EES15994.1| hypothetical protein
           SORBIDRAFT_08g015260 [Sorghum bicolor]
          Length = 557

 Score = 61.2 bits (147), Expect(2) = 6e-14
 Identities = 30/62 (48%), Positives = 37/62 (59%)
 Frame = +1

Query: 43  VQDATMQVLRMTEDYGVERSVDHCGRLVDLLGREGHVEEACDLVRNMKVQPHVGVWGALL 222
           V D       M  +Y +E+S DH   +VDL GR G +EEA  L R M V+PH GVWGAL+
Sbjct: 397 VHDGKFYFESMRTNYAIEQSPDHYACMVDLYGRAGLIEEAYQLARAMPVKPHAGVWGALI 456

Query: 223 AA 228
            A
Sbjct: 457 NA 458



 Score = 40.8 bits (94), Expect(2) = 6e-14
 Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 5/42 (11%)
 Frame = +3

Query: 225 GIWGSGV-----YHNVEIGKIAAEKLFIMEPENRGNYAILSN 335
           G+WG+ +     + NVE+GK+AA +L  +EP N G Y +L+N
Sbjct: 450 GVWGALINACRKHCNVEVGKVAARELIAIEPGNPGTYVLLAN 491