BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00041164
         (281 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN66750.1| hypothetical protein VITISV_034413 [Vitis vinifera]    89   3e-34
ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chlor...    89   3e-34
ref|XP_002519370.1| ribosomal pseudouridine synthase, putative [...    86   8e-33
ref|XP_002301949.1| predicted protein [Populus trichocarpa] gi|2...    83   1e-30
ref|XP_003523282.1| PREDICTED: RNA pseudourine synthase 2, chlor...    77   2e-29

>emb|CAN66750.1| hypothetical protein VITISV_034413 [Vitis vinifera]
          Length = 611

 Score = 89.0 bits (219), Expect(2) = 3e-34
 Identities = 43/56 (76%), Positives = 48/56 (85%)
 Frame = +1

Query: 1   LSEQFKQHTIHRVYISLTSGVPTTLSGRVEVPIGRDINNRIRMAAIPCPSVSRQVQ 168
           LSEQFK H+IHRVYISLTSGVPT LSGRVE+P+GRD NNRIRM A+P PS S Q +
Sbjct: 394 LSEQFKLHSIHRVYISLTSGVPTPLSGRVEIPVGRDPNNRIRMTAVPGPSNSGQAR 449



 Score = 81.3 bits (199), Expect(2) = 3e-34
 Identities = 38/40 (95%), Positives = 39/40 (97%)
 Frame = +2

Query: 161 RYKVIEVLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLL 280
           RYKVIE+LA GGSALVEWRLETGRTHQIRAHAKYLGIPLL
Sbjct: 454 RYKVIEILAAGGSALVEWRLETGRTHQIRAHAKYLGIPLL 493


>ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Vitis
           vinifera] gi|302141717|emb|CBI18920.3| unnamed protein
           product [Vitis vinifera]
          Length = 433

 Score = 89.0 bits (219), Expect(2) = 3e-34
 Identities = 43/56 (76%), Positives = 48/56 (85%)
 Frame = +1

Query: 1   LSEQFKQHTIHRVYISLTSGVPTTLSGRVEVPIGRDINNRIRMAAIPCPSVSRQVQ 168
           LSEQFK H+IHRVYISLTSGVPT LSGRVE+P+GRD NNRIRM A+P PS S Q +
Sbjct: 248 LSEQFKLHSIHRVYISLTSGVPTPLSGRVEIPVGRDPNNRIRMTAVPGPSNSGQAR 303



 Score = 81.3 bits (199), Expect(2) = 3e-34
 Identities = 38/40 (95%), Positives = 39/40 (97%)
 Frame = +2

Query: 161 RYKVIEVLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLL 280
           RYKVIE+LA GGSALVEWRLETGRTHQIRAHAKYLGIPLL
Sbjct: 308 RYKVIEILAAGGSALVEWRLETGRTHQIRAHAKYLGIPLL 347


>ref|XP_002519370.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223541437|gb|EEF42987.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 399

 Score = 85.9 bits (211), Expect(2) = 8e-33
 Identities = 39/49 (79%), Positives = 45/49 (91%)
 Frame = +1

Query: 1   LSEQFKQHTIHRVYISLTSGVPTTLSGRVEVPIGRDINNRIRMAAIPCP 147
           LSEQFKQHTI RVYISLTSGVP+ L+GR+++PIGRD+NNRIRM AIP P
Sbjct: 240 LSEQFKQHTIQRVYISLTSGVPSALTGRIDIPIGRDVNNRIRMTAIPGP 288



 Score = 79.7 bits (195), Expect(2) = 8e-33
 Identities = 36/40 (90%), Positives = 39/40 (97%)
 Frame = +2

Query: 161 RYKVIEVLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLL 280
           R+KV+E LAGGGSALVEWRLETGRTHQIRAHAKY+GIPLL
Sbjct: 300 RFKVVETLAGGGSALVEWRLETGRTHQIRAHAKYIGIPLL 339


>ref|XP_002301949.1| predicted protein [Populus trichocarpa] gi|222843675|gb|EEE81222.1|
           predicted protein [Populus trichocarpa]
          Length = 444

 Score = 82.8 bits (203), Expect(2) = 1e-30
 Identities = 38/40 (95%), Positives = 40/40 (100%)
 Frame = +2

Query: 161 RYKVIEVLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLL 280
           RYKVIE+LAGGGSALVEWRLETGRTHQIRAHAKY+GIPLL
Sbjct: 320 RYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYIGIPLL 359



 Score = 75.5 bits (184), Expect(2) = 1e-30
 Identities = 35/50 (70%), Positives = 43/50 (86%)
 Frame = +1

Query: 1   LSEQFKQHTIHRVYISLTSGVPTTLSGRVEVPIGRDINNRIRMAAIPCPS 150
           LSEQFK HTI RVY+SLT GVP  ++GR++VPIGRD++NRIRMAAI  P+
Sbjct: 261 LSEQFKLHTIKRVYVSLTCGVPAPMAGRIDVPIGRDVSNRIRMAAIVEPN 310


>ref|XP_003523282.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Glycine
           max]
          Length = 450

 Score = 77.4 bits (189), Expect(2) = 2e-29
 Identities = 36/56 (64%), Positives = 46/56 (82%)
 Frame = +1

Query: 1   LSEQFKQHTIHRVYISLTSGVPTTLSGRVEVPIGRDINNRIRMAAIPCPSVSRQVQ 168
           LSEQFKQ TI R+Y+SLT+GVPT ++GRVEVP+GRD NNRIRM A+  P  S++ +
Sbjct: 262 LSEQFKQRTIKRLYVSLTAGVPTPVAGRVEVPVGRDTNNRIRMTAVTGPVNSKKAR 317



 Score = 77.0 bits (188), Expect(2) = 2e-29
 Identities = 35/46 (76%), Positives = 40/46 (86%)
 Frame = +2

Query: 143 ALVSLDRYKVIEVLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLL 280
           A  +  RYKVIE+LAGG  +LVEW+LETGRTHQIRAHAKYLG+PLL
Sbjct: 316 ARYAASRYKVIEILAGGSCSLVEWKLETGRTHQIRAHAKYLGVPLL 361