BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00041124
         (304 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002518527.1| pentatricopeptide repeat-containing protein,...    63   3e-08
ref|XP_002305605.1| predicted protein [Populus trichocarpa] gi|2...    61   8e-08
ref|XP_002264956.1| PREDICTED: pentatricopeptide repeat-containi...    55   6e-06

>ref|XP_002518527.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223542372|gb|EEF43914.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 599

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 27/61 (44%), Positives = 36/61 (59%)
 Frame = -2

Query: 198 NWFPXXXXXXXXXXXLTPYVFTQVLHKLEKDPHLSLTFFNWAKTNLEYKPDFKSHCKLVQ 19
           NW P            TP++F Q+LHK +    +SL FFNWAKTNL + PD KS C ++Q
Sbjct: 65  NWIPLLQNLNLSSKL-TPFLFFQILHKTQTHAQISLNFFNWAKTNLNFNPDLKSQCHVIQ 123

Query: 18  I 16
           +
Sbjct: 124 L 124


>ref|XP_002305605.1| predicted protein [Populus trichocarpa] gi|222848569|gb|EEE86116.1|
           predicted protein [Populus trichocarpa]
          Length = 564

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 24/45 (53%), Positives = 33/45 (73%)
 Frame = -2

Query: 150 TPYVFTQVLHKLEKDPHLSLTFFNWAKTNLEYKPDFKSHCKLVQI 16
           TP +F Q+LHK + +P +SL FFNW +TNL+ KPD KS C ++ I
Sbjct: 51  TPPLFNQILHKTQTNPQISLRFFNWVQTNLKLKPDLKSQCHIINI 95


>ref|XP_002264956.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21170-like [Vitis vinifera]
          Length = 569

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 28/96 (29%), Positives = 44/96 (45%)
 Frame = -2

Query: 303 NFEAFVRADMSLKWRKXXXXXXXXXXXXXXXXXXQNWFPXXXXXXXXXXXLTPYVFTQVL 124
           +F  F ++   L WR                    NW              TP +F Q+L
Sbjct: 9   SFNQFSKSTTPLNWRAQIKQNQLISQISSILLQRHNWVTLLRNFNLSSKL-TPSLFHQIL 67

Query: 123 HKLEKDPHLSLTFFNWAKTNLEYKPDFKSHCKLVQI 16
            K +K+P  SL+FFNW +TNL ++PD  +H ++++I
Sbjct: 68  LKTQKNPQSSLSFFNWVRTNLGFQPDLAAHSQIIRI 103