BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00041122
         (344 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276456.1| PREDICTED: pentatricopeptide repeat-containi...   177   8e-43
emb|CAN65709.1| hypothetical protein VITISV_020733 [Vitis vinifera]   177   8e-43
ref|XP_004143574.1| PREDICTED: pentatricopeptide repeat-containi...   157   1e-36
ref|XP_003532847.1| PREDICTED: pentatricopeptide repeat-containi...   154   6e-36
ref|NP_001119013.1| pentatricopeptide repeat-containing protein ...   154   1e-35

>ref|XP_002276456.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial [Vitis vinifera]
           gi|296082485|emb|CBI21490.3| unnamed protein product
           [Vitis vinifera]
          Length = 637

 Score =  177 bits (449), Expect = 8e-43
 Identities = 82/114 (71%), Positives = 101/114 (88%)
 Frame = +3

Query: 3   CGSMIDAREIFLSMPERTVVSWTTMIAGYALNGKFEKALCLFYQMVESGSKPNHVTFLAV 182
           CGSM +ARE+F +MPE+++VSWTT+IAG ALNG+F++AL LF+QMVE G KPNH+TFLAV
Sbjct: 407 CGSMDNARELFYTMPEKSLVSWTTLIAGCALNGEFKEALGLFFQMVELGLKPNHITFLAV 466

Query: 183 LQACIHGGILEKGLECFALMTEVYKISPTLEHYACMADLFGRKGKLKEAFQFIK 344
           LQAC H G LEKG ECF LMT+VYKI+P L+HY+CMADL GRKG+LKEAF+FI+
Sbjct: 467 LQACNHAGFLEKGWECFNLMTKVYKINPGLDHYSCMADLLGRKGRLKEAFEFIQ 520



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 32/73 (43%), Positives = 44/73 (60%)
 Frame = +3

Query: 3   CGSMIDAREIFLSMPERTVVSWTTMIAGYALNGKFEKALCLFYQMVESGSKPNHVTFLAV 182
           CG +  AR +F +M  +T VSWT MIAGYA  G  ++A+ LF  M   G KP+ VT +++
Sbjct: 306 CGDIGSARYLFDNMLGKTRVSWTAMIAGYAEKGDLDEAMTLFSAMEAVGEKPDLVTIISL 365

Query: 183 LQACIHGGILEKG 221
           +  C   G LE G
Sbjct: 366 MSGCGQTGALELG 378


>emb|CAN65709.1| hypothetical protein VITISV_020733 [Vitis vinifera]
          Length = 609

 Score =  177 bits (449), Expect = 8e-43
 Identities = 82/114 (71%), Positives = 101/114 (88%)
 Frame = +3

Query: 3   CGSMIDAREIFLSMPERTVVSWTTMIAGYALNGKFEKALCLFYQMVESGSKPNHVTFLAV 182
           CGSM +ARE+F +MPE+++VSWTT+IAG ALNG+F++AL LF+QMVE G KPNH+TFLAV
Sbjct: 407 CGSMDNARELFYTMPEKSLVSWTTLIAGCALNGEFKEALGLFFQMVELGLKPNHITFLAV 466

Query: 183 LQACIHGGILEKGLECFALMTEVYKISPTLEHYACMADLFGRKGKLKEAFQFIK 344
           LQAC H G LEKG ECF LMT+VYKI+P L+HY+CMADL GRKG+LKEAF+FI+
Sbjct: 467 LQACNHAGFLEKGWECFNLMTKVYKINPGLDHYSCMADLLGRKGRLKEAFEFIQ 520



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 31/73 (42%), Positives = 43/73 (58%)
 Frame = +3

Query: 3   CGSMIDAREIFLSMPERTVVSWTTMIAGYALNGKFEKALCLFYQMVESGSKPNHVTFLAV 182
           CG +  AR +F +M  +T VSWT MIAG A  G  ++A+ LF  M   G KP+ VT +++
Sbjct: 306 CGDIGSARYLFDNMLGKTRVSWTAMIAGXAEKGDLDEAMTLFSAMEAVGEKPDLVTIISL 365

Query: 183 LQACIHGGILEKG 221
           +  C   G LE G
Sbjct: 366 MSGCGQTGALELG 378


>ref|XP_004143574.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Cucumis sativus]
           gi|449516723|ref|XP_004165396.1| PREDICTED:
           pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  157 bits (396), Expect = 1e-36
 Identities = 76/114 (66%), Positives = 90/114 (78%)
 Frame = +3

Query: 3   CGSMIDAREIFLSMPERTVVSWTTMIAGYALNGKFEKALCLFYQMVESGSKPNHVTFLAV 182
           CGS+ DAREIF S+P RTVVSWT MIA  ALNG+F +AL LF  + ESG +PN++TFLAV
Sbjct: 405 CGSLNDAREIFYSLPNRTVVSWTAMIAACALNGEFREALDLFSLLSESGIEPNNITFLAV 464

Query: 183 LQACIHGGILEKGLECFALMTEVYKISPTLEHYACMADLFGRKGKLKEAFQFIK 344
           LQAC HGG LEKG ECF +MTE Y I+P L+HY+CM DL GRKGKL EA + I+
Sbjct: 465 LQACCHGGYLEKGRECFMMMTERYGINPGLDHYSCMIDLLGRKGKLIEALEVIQ 518



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 4/113 (3%)
 Frame = +3

Query: 3   CGSMIDAREIFLSMPERTVVSWTTMIAGYALNGKFEKALCLFYQMVESGSKPNHVTFLAV 182
           CG +  A  +F  M  RT VSWT MI+GY+  G+ + AL LF  M E+G KP+ VT L++
Sbjct: 304 CGDISSATILFDGMSIRTCVSWTAMISGYSEVGRVDDALVLFNAMEETGEKPDIVTVLSL 363

Query: 183 LQACIHGGILEKG--LECFALMTEVYKISPTLEHYACMA--DLFGRKGKLKEA 329
           +  C   G L  G  ++ +A + E+ K     +   C A  D++ + G L +A
Sbjct: 364 ISGCGKTGALGLGHWIDNYASLHELKK-----DVVVCNALIDMYAKCGSLNDA 411


>ref|XP_003532847.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Glycine max]
          Length = 651

 Score =  154 bits (390), Expect = 6e-36
 Identities = 70/114 (61%), Positives = 88/114 (77%)
 Frame = +3

Query: 3   CGSMIDAREIFLSMPERTVVSWTTMIAGYALNGKFEKALCLFYQMVESGSKPNHVTFLAV 182
           CG   DA+E+F +M  RTVVSWTTMI   ALNG  + AL LF+ M+E G KPNH+TFLAV
Sbjct: 406 CGGFNDAKELFYTMANRTVVSWTTMITACALNGDVKDALELFFMMLEMGMKPNHITFLAV 465

Query: 183 LQACIHGGILEKGLECFALMTEVYKISPTLEHYACMADLFGRKGKLKEAFQFIK 344
           LQAC HGG++E+GLECF +MT+ Y I+P ++HY+CM DL GRKG L+EA + IK
Sbjct: 466 LQACAHGGLVERGLECFNMMTQKYGINPGIDHYSCMVDLLGRKGHLREALEIIK 519



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 32/73 (43%), Positives = 43/73 (58%)
 Frame = +3

Query: 3   CGSMIDAREIFLSMPERTVVSWTTMIAGYALNGKFEKALCLFYQMVESGSKPNHVTFLAV 182
           CG +  AR +F  M ++T VSWT MI+ YA  G   +A+ LF  M  +G KP+ VT LA+
Sbjct: 305 CGDVHSARFLFNGMSDKTCVSWTVMISAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVLAL 364

Query: 183 LQACIHGGILEKG 221
           +  C   G LE G
Sbjct: 365 ISGCGQTGALELG 377


>ref|NP_001119013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|223635616|sp|P0C8Q2.1|PP323_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g19191, mitochondrial; Flags: Precursor
           gi|332658758|gb|AEE84158.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  154 bits (388), Expect = 1e-35
 Identities = 73/114 (64%), Positives = 91/114 (79%)
 Frame = +3

Query: 3   CGSMIDAREIFLSMPERTVVSWTTMIAGYALNGKFEKALCLFYQMVESGSKPNHVTFLAV 182
           CGS+ +AR+IF + PE+TVV+WTTMIAGYALNG F +AL LF +M++   KPNH+TFLAV
Sbjct: 406 CGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAV 465

Query: 183 LQACIHGGILEKGLECFALMTEVYKISPTLEHYACMADLFGRKGKLKEAFQFIK 344
           LQAC H G LEKG E F +M +VY ISP L+HY+CM DL GRKGKL+EA + I+
Sbjct: 466 LQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLEEALELIR 519



 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 33/67 (49%), Positives = 44/67 (65%)
 Frame = +3

Query: 21  AREIFLSMPERTVVSWTTMIAGYALNGKFEKALCLFYQMVESGSKPNHVTFLAVLQACIH 200
           AR +F  M  RT VSWT MI+GYA  G  ++AL LF+ M++SG KP+ VT L+++  C  
Sbjct: 310 ARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGK 369

Query: 201 GGILEKG 221
            G LE G
Sbjct: 370 FGSLETG 376