BLASTX nr result
ID: Coptis21_contig00041122
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00041122 (344 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002276456.1| PREDICTED: pentatricopeptide repeat-containi... 177 8e-43 emb|CAN65709.1| hypothetical protein VITISV_020733 [Vitis vinifera] 177 8e-43 ref|XP_004143574.1| PREDICTED: pentatricopeptide repeat-containi... 157 1e-36 ref|XP_003532847.1| PREDICTED: pentatricopeptide repeat-containi... 154 6e-36 ref|NP_001119013.1| pentatricopeptide repeat-containing protein ... 154 1e-35 >ref|XP_002276456.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191, mitochondrial [Vitis vinifera] gi|296082485|emb|CBI21490.3| unnamed protein product [Vitis vinifera] Length = 637 Score = 177 bits (449), Expect = 8e-43 Identities = 82/114 (71%), Positives = 101/114 (88%) Frame = +3 Query: 3 CGSMIDAREIFLSMPERTVVSWTTMIAGYALNGKFEKALCLFYQMVESGSKPNHVTFLAV 182 CGSM +ARE+F +MPE+++VSWTT+IAG ALNG+F++AL LF+QMVE G KPNH+TFLAV Sbjct: 407 CGSMDNARELFYTMPEKSLVSWTTLIAGCALNGEFKEALGLFFQMVELGLKPNHITFLAV 466 Query: 183 LQACIHGGILEKGLECFALMTEVYKISPTLEHYACMADLFGRKGKLKEAFQFIK 344 LQAC H G LEKG ECF LMT+VYKI+P L+HY+CMADL GRKG+LKEAF+FI+ Sbjct: 467 LQACNHAGFLEKGWECFNLMTKVYKINPGLDHYSCMADLLGRKGRLKEAFEFIQ 520 Score = 62.8 bits (151), Expect = 3e-08 Identities = 32/73 (43%), Positives = 44/73 (60%) Frame = +3 Query: 3 CGSMIDAREIFLSMPERTVVSWTTMIAGYALNGKFEKALCLFYQMVESGSKPNHVTFLAV 182 CG + AR +F +M +T VSWT MIAGYA G ++A+ LF M G KP+ VT +++ Sbjct: 306 CGDIGSARYLFDNMLGKTRVSWTAMIAGYAEKGDLDEAMTLFSAMEAVGEKPDLVTIISL 365 Query: 183 LQACIHGGILEKG 221 + C G LE G Sbjct: 366 MSGCGQTGALELG 378 >emb|CAN65709.1| hypothetical protein VITISV_020733 [Vitis vinifera] Length = 609 Score = 177 bits (449), Expect = 8e-43 Identities = 82/114 (71%), Positives = 101/114 (88%) Frame = +3 Query: 3 CGSMIDAREIFLSMPERTVVSWTTMIAGYALNGKFEKALCLFYQMVESGSKPNHVTFLAV 182 CGSM +ARE+F +MPE+++VSWTT+IAG ALNG+F++AL LF+QMVE G KPNH+TFLAV Sbjct: 407 CGSMDNARELFYTMPEKSLVSWTTLIAGCALNGEFKEALGLFFQMVELGLKPNHITFLAV 466 Query: 183 LQACIHGGILEKGLECFALMTEVYKISPTLEHYACMADLFGRKGKLKEAFQFIK 344 LQAC H G LEKG ECF LMT+VYKI+P L+HY+CMADL GRKG+LKEAF+FI+ Sbjct: 467 LQACNHAGFLEKGWECFNLMTKVYKINPGLDHYSCMADLLGRKGRLKEAFEFIQ 520 Score = 59.7 bits (143), Expect = 2e-07 Identities = 31/73 (42%), Positives = 43/73 (58%) Frame = +3 Query: 3 CGSMIDAREIFLSMPERTVVSWTTMIAGYALNGKFEKALCLFYQMVESGSKPNHVTFLAV 182 CG + AR +F +M +T VSWT MIAG A G ++A+ LF M G KP+ VT +++ Sbjct: 306 CGDIGSARYLFDNMLGKTRVSWTAMIAGXAEKGDLDEAMTLFSAMEAVGEKPDLVTIISL 365 Query: 183 LQACIHGGILEKG 221 + C G LE G Sbjct: 366 MSGCGQTGALELG 378 >ref|XP_004143574.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191, mitochondrial-like [Cucumis sativus] gi|449516723|ref|XP_004165396.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191, mitochondrial-like [Cucumis sativus] Length = 651 Score = 157 bits (396), Expect = 1e-36 Identities = 76/114 (66%), Positives = 90/114 (78%) Frame = +3 Query: 3 CGSMIDAREIFLSMPERTVVSWTTMIAGYALNGKFEKALCLFYQMVESGSKPNHVTFLAV 182 CGS+ DAREIF S+P RTVVSWT MIA ALNG+F +AL LF + ESG +PN++TFLAV Sbjct: 405 CGSLNDAREIFYSLPNRTVVSWTAMIAACALNGEFREALDLFSLLSESGIEPNNITFLAV 464 Query: 183 LQACIHGGILEKGLECFALMTEVYKISPTLEHYACMADLFGRKGKLKEAFQFIK 344 LQAC HGG LEKG ECF +MTE Y I+P L+HY+CM DL GRKGKL EA + I+ Sbjct: 465 LQACCHGGYLEKGRECFMMMTERYGINPGLDHYSCMIDLLGRKGKLIEALEVIQ 518 Score = 63.9 bits (154), Expect = 1e-08 Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 4/113 (3%) Frame = +3 Query: 3 CGSMIDAREIFLSMPERTVVSWTTMIAGYALNGKFEKALCLFYQMVESGSKPNHVTFLAV 182 CG + A +F M RT VSWT MI+GY+ G+ + AL LF M E+G KP+ VT L++ Sbjct: 304 CGDISSATILFDGMSIRTCVSWTAMISGYSEVGRVDDALVLFNAMEETGEKPDIVTVLSL 363 Query: 183 LQACIHGGILEKG--LECFALMTEVYKISPTLEHYACMA--DLFGRKGKLKEA 329 + C G L G ++ +A + E+ K + C A D++ + G L +A Sbjct: 364 ISGCGKTGALGLGHWIDNYASLHELKK-----DVVVCNALIDMYAKCGSLNDA 411 >ref|XP_003532847.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191, mitochondrial-like [Glycine max] Length = 651 Score = 154 bits (390), Expect = 6e-36 Identities = 70/114 (61%), Positives = 88/114 (77%) Frame = +3 Query: 3 CGSMIDAREIFLSMPERTVVSWTTMIAGYALNGKFEKALCLFYQMVESGSKPNHVTFLAV 182 CG DA+E+F +M RTVVSWTTMI ALNG + AL LF+ M+E G KPNH+TFLAV Sbjct: 406 CGGFNDAKELFYTMANRTVVSWTTMITACALNGDVKDALELFFMMLEMGMKPNHITFLAV 465 Query: 183 LQACIHGGILEKGLECFALMTEVYKISPTLEHYACMADLFGRKGKLKEAFQFIK 344 LQAC HGG++E+GLECF +MT+ Y I+P ++HY+CM DL GRKG L+EA + IK Sbjct: 466 LQACAHGGLVERGLECFNMMTQKYGINPGIDHYSCMVDLLGRKGHLREALEIIK 519 Score = 63.9 bits (154), Expect = 1e-08 Identities = 32/73 (43%), Positives = 43/73 (58%) Frame = +3 Query: 3 CGSMIDAREIFLSMPERTVVSWTTMIAGYALNGKFEKALCLFYQMVESGSKPNHVTFLAV 182 CG + AR +F M ++T VSWT MI+ YA G +A+ LF M +G KP+ VT LA+ Sbjct: 305 CGDVHSARFLFNGMSDKTCVSWTVMISAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVLAL 364 Query: 183 LQACIHGGILEKG 221 + C G LE G Sbjct: 365 ISGCGQTGALELG 377 >ref|NP_001119013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|223635616|sp|P0C8Q2.1|PP323_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g19191, mitochondrial; Flags: Precursor gi|332658758|gb|AEE84158.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 654 Score = 154 bits (388), Expect = 1e-35 Identities = 73/114 (64%), Positives = 91/114 (79%) Frame = +3 Query: 3 CGSMIDAREIFLSMPERTVVSWTTMIAGYALNGKFEKALCLFYQMVESGSKPNHVTFLAV 182 CGS+ +AR+IF + PE+TVV+WTTMIAGYALNG F +AL LF +M++ KPNH+TFLAV Sbjct: 406 CGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAV 465 Query: 183 LQACIHGGILEKGLECFALMTEVYKISPTLEHYACMADLFGRKGKLKEAFQFIK 344 LQAC H G LEKG E F +M +VY ISP L+HY+CM DL GRKGKL+EA + I+ Sbjct: 466 LQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLEEALELIR 519 Score = 66.6 bits (161), Expect = 2e-09 Identities = 33/67 (49%), Positives = 44/67 (65%) Frame = +3 Query: 21 AREIFLSMPERTVVSWTTMIAGYALNGKFEKALCLFYQMVESGSKPNHVTFLAVLQACIH 200 AR +F M RT VSWT MI+GYA G ++AL LF+ M++SG KP+ VT L+++ C Sbjct: 310 ARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGK 369 Query: 201 GGILEKG 221 G LE G Sbjct: 370 FGSLETG 376