BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00041088
         (323 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    60   1e-07
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta...    58   7e-07
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...    58   9e-07
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...    55   5e-06

>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease
           H; Endonuclease/exonuclease/phosphatase [Medicago
           truncatula]
          Length = 1246

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 34/87 (39%), Positives = 46/87 (52%)
 Frame = -2

Query: 265 LIHAMPQSVSEDDNAKLSTIPSAQEVKAAVFHLKAXXXXXXXXXXXXXFQQCWDIVEYDV 86
           ++  +P  VS  DN  L  +P   EVK AVF L               +Q  WDIV  DV
Sbjct: 422 VVDTIPSLVSNVDNNSLLRLPLWGEVKNAVFTLNGDGAPGPNGFGGHFYQTYWDIVGADV 481

Query: 85  VRAIRYFFIKARLPKGFNSNFIVLIPK 5
           +++++ FFI  +L +  NSN IVLIPK
Sbjct: 482 IQSVQDFFISGQLAQNINSNLIVLIPK 508


>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1229

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
 Frame = -2

Query: 322 LVSHYEEKFRKTEHVIDWSLI-HAMPQSVSEDDNAKLSTIPSAQEVKAAVFHLKAXXXXX 146
           ++S Y ++   +E   D+S++  A+   VS+ DN  L+ IP+ +EVK AVF + A     
Sbjct: 283 IISGYFQQIFTSESDGDFSVVDEAIEPMVSQGDNDFLTRIPNDEEVKDAVFSINASKAPG 342

Query: 145 XXXXXXXXFQQCWDIVEYDVVRAIRYFFIKARLPKGFNSNFIVLIPKE 2
                   +   W I+  DV R IR FF     P+  N   I LIPK+
Sbjct: 343 PDGFTAGFYHSYWHIISTDVGREIRLFFTSKNFPRRMNETHIRLIPKD 390


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 38/101 (37%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
 Frame = -2

Query: 304 EKFRKTEHVIDWSLIH-AMPQSVSEDDNAKLSTIPSAQEVKAAVFHLKAXXXXXXXXXXX 128
           ++ R +EH  D  L+  A+P+ V    N  L+ +P+ +EVK AVF L +           
Sbjct: 145 DQTRISEH--DHLLVEEAIPKLVDATTNRLLTMLPTKEEVKNAVFDLNSDDAPGPDVFGA 202

Query: 127 XXFQQCWDIVEYDVVRAIRYFFIKARLPKGFNSNFIVLIPK 5
             FQ  W+IV+ DV  A+  FF    LP  FN+N I+LIPK
Sbjct: 203 CFFQIYWNIVKKDVYEAVLDFFKNGWLPNNFNANSIILIPK 243


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1216

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 28/88 (31%), Positives = 47/88 (53%)
 Frame = -2

Query: 265 LIHAMPQSVSEDDNAKLSTIPSAQEVKAAVFHLKAXXXXXXXXXXXXXFQQCWDIVEYDV 86
           L + +P   SEDD+  L+ + + +E+K  +F +               ++  W+I+  +V
Sbjct: 154 LENLLPFRCSEDDHRLLTRVVTGEEIKKVIFSMPKDKSPGPDGYTSEFYKASWEIIGDEV 213

Query: 85  VRAIRYFFIKARLPKGFNSNFIVLIPKE 2
           + AI+ FF K  LPKG NS  + LIPK+
Sbjct: 214 IIAIQSFFAKGFLPKGVNSTILALIPKK 241