BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00041046
         (267 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_186850.1| pentatricopeptide repeat-containing protein [Ar...    71   8e-11
ref|XP_002885940.1| pentatricopeptide repeat-containing protein ...    71   1e-10
ref|XP_002512846.1| pentatricopeptide repeat-containing protein,...    69   4e-10
ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pen...    67   1e-09
ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat...    67   1e-09

>ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName:
           Full=Putative pentatricopeptide repeat-containing
           protein At2g01510 gi|6091739|gb|AAF03451.1|AC010797_27
           hypothetical protein [Arabidopsis thaliana]
           gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical
           protein [Arabidopsis thaliana]
           gi|332640228|gb|AEE73749.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 30/49 (61%), Positives = 43/49 (87%)
 Frame = +3

Query: 120 DAQIIKTGFNPATCRSNYLMDDLLKRGQISHAHQLFNKMPHKNMVSNNT 266
           DA+IIKTGF+  TCRSN++++DLL+RGQ+S A +++++MPHKN VS NT
Sbjct: 36  DARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNT 84


>ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297331780|gb|EFH62199.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 944

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 31/49 (63%), Positives = 42/49 (85%)
 Frame = +3

Query: 120 DAQIIKTGFNPATCRSNYLMDDLLKRGQISHAHQLFNKMPHKNMVSNNT 266
           DA+IIKTGFN  TCRSN+ ++DLL+RGQ+S A +++++MPHKN VS NT
Sbjct: 32  DARIIKTGFNTDTCRSNFTVEDLLRRGQVSAALKVYDEMPHKNTVSTNT 80


>ref|XP_002512846.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223547857|gb|EEF49349.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 553

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 35/65 (53%), Positives = 45/65 (69%)
 Frame = +3

Query: 69  SQPQSLIIPFQHFSAVPDAQIIKTGFNPATCRSNYLMDDLLKRGQISHAHQLFNKMPHKN 248
           SQPQ+    + +     DA+I+KTGFNP T RSNY +  LL+RGQ+S A  LF++MPHKN
Sbjct: 19  SQPQNK--SYHNAGIFIDARIVKTGFNPITSRSNYQVKSLLQRGQLSEARDLFDQMPHKN 76

Query: 249 MVSNN 263
            VS N
Sbjct: 77  TVSVN 81


>ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 28/48 (58%), Positives = 39/48 (81%)
 Frame = +3

Query: 120 DAQIIKTGFNPATCRSNYLMDDLLKRGQISHAHQLFNKMPHKNMVSNN 263
           DA I+KTGFNP TCRSN+ +++ L+RG + HAHQ+F++MP KN +S N
Sbjct: 31  DAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLN 78


>ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 28/48 (58%), Positives = 39/48 (81%)
 Frame = +3

Query: 120 DAQIIKTGFNPATCRSNYLMDDLLKRGQISHAHQLFNKMPHKNMVSNN 263
           DA I+KTGFNP TCRSN+ +++ L+RG + HAHQ+F++MP KN +S N
Sbjct: 31  DAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLN 78