BLASTX nr result
ID: Coptis21_contig00041046
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00041046 (267 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_186850.1| pentatricopeptide repeat-containing protein [Ar... 71 8e-11 ref|XP_002885940.1| pentatricopeptide repeat-containing protein ... 71 1e-10 ref|XP_002512846.1| pentatricopeptide repeat-containing protein,... 69 4e-10 ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pen... 67 1e-09 ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat... 67 1e-09 >ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At2g01510 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana] gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana] gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] Length = 825 Score = 71.2 bits (173), Expect = 8e-11 Identities = 30/49 (61%), Positives = 43/49 (87%) Frame = +3 Query: 120 DAQIIKTGFNPATCRSNYLMDDLLKRGQISHAHQLFNKMPHKNMVSNNT 266 DA+IIKTGF+ TCRSN++++DLL+RGQ+S A +++++MPHKN VS NT Sbjct: 36 DARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNT 84 >ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 944 Score = 70.9 bits (172), Expect = 1e-10 Identities = 31/49 (63%), Positives = 42/49 (85%) Frame = +3 Query: 120 DAQIIKTGFNPATCRSNYLMDDLLKRGQISHAHQLFNKMPHKNMVSNNT 266 DA+IIKTGFN TCRSN+ ++DLL+RGQ+S A +++++MPHKN VS NT Sbjct: 32 DARIIKTGFNTDTCRSNFTVEDLLRRGQVSAALKVYDEMPHKNTVSTNT 80 >ref|XP_002512846.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223547857|gb|EEF49349.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 553 Score = 68.9 bits (167), Expect = 4e-10 Identities = 35/65 (53%), Positives = 45/65 (69%) Frame = +3 Query: 69 SQPQSLIIPFQHFSAVPDAQIIKTGFNPATCRSNYLMDDLLKRGQISHAHQLFNKMPHKN 248 SQPQ+ + + DA+I+KTGFNP T RSNY + LL+RGQ+S A LF++MPHKN Sbjct: 19 SQPQNK--SYHNAGIFIDARIVKTGFNPITSRSNYQVKSLLQRGQLSEARDLFDQMPHKN 76 Query: 249 MVSNN 263 VS N Sbjct: 77 TVSVN 81 >ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At2g01510-like [Cucumis sativus] Length = 816 Score = 67.4 bits (163), Expect = 1e-09 Identities = 28/48 (58%), Positives = 39/48 (81%) Frame = +3 Query: 120 DAQIIKTGFNPATCRSNYLMDDLLKRGQISHAHQLFNKMPHKNMVSNN 263 DA I+KTGFNP TCRSN+ +++ L+RG + HAHQ+F++MP KN +S N Sbjct: 31 DAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLN 78 >ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein At2g01510-like [Cucumis sativus] Length = 816 Score = 67.4 bits (163), Expect = 1e-09 Identities = 28/48 (58%), Positives = 39/48 (81%) Frame = +3 Query: 120 DAQIIKTGFNPATCRSNYLMDDLLKRGQISHAHQLFNKMPHKNMVSNN 263 DA I+KTGFNP TCRSN+ +++ L+RG + HAHQ+F++MP KN +S N Sbjct: 31 DAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLN 78