BLASTX nr result

ID: Coptis21_contig00041024 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00041024
         (247 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003535589.1| PREDICTED: ABC transporter G family member 8...   103   1e-20
ref|XP_002329680.1| white-brown-complex ABC transporter family [...   102   3e-20
ref|XP_003592180.1| ABC transporter G family member [Medicago tr...   100   9e-20
ref|XP_003556131.1| PREDICTED: LOW QUALITY PROTEIN: ABC transpor...    98   8e-19
emb|CBI22616.3| unnamed protein product [Vitis vinifera]               98   8e-19

>ref|XP_003535589.1| PREDICTED: ABC transporter G family member 8-like [Glycine max]
          Length = 599

 Score =  103 bits (258), Expect = 1e-20
 Identities = 54/82 (65%), Positives = 59/82 (71%)
 Frame = -2

Query: 246 EISTLYGRFWKIIYRTRQLLLTNTLEALVVGTVLGSIYINVGFDKQSIEKRXXXXXXXXX 67
           EI TLY RFWKIIYRTRQLLLTNT EAL+VG VLG+IYIN+GFDK+ IEKR         
Sbjct: 324 EIFTLYSRFWKIIYRTRQLLLTNTAEALLVGLVLGTIYINIGFDKEGIEKRFGLFAFTLT 383

Query: 66  XXXXXXXXXLPIFINERPIILR 1
                    LPIFINERPI+LR
Sbjct: 384 FLLSSTTETLPIFINERPILLR 405


>ref|XP_002329680.1| white-brown-complex ABC transporter family [Populus trichocarpa]
           gi|222870588|gb|EEF07719.1| white-brown-complex ABC
           transporter family [Populus trichocarpa]
          Length = 593

 Score =  102 bits (254), Expect = 3e-20
 Identities = 53/82 (64%), Positives = 58/82 (70%)
 Frame = -2

Query: 246 EISTLYGRFWKIIYRTRQLLLTNTLEALVVGTVLGSIYINVGFDKQSIEKRXXXXXXXXX 67
           EI  LY RFWKIIYRTRQLLLTNTLEAL+VG VLG+IYIN+G+ KQ IEKR         
Sbjct: 318 EICVLYSRFWKIIYRTRQLLLTNTLEALIVGLVLGTIYINIGYGKQGIEKRFGLFAFTLT 377

Query: 66  XXXXXXXXXLPIFINERPIILR 1
                    LPIFINERPI+LR
Sbjct: 378 FLLSSTTETLPIFINERPILLR 399


>ref|XP_003592180.1| ABC transporter G family member [Medicago truncatula]
           gi|355481228|gb|AES62431.1| ABC transporter G family
           member [Medicago truncatula]
          Length = 610

 Score =  100 bits (250), Expect = 9e-20
 Identities = 52/82 (63%), Positives = 59/82 (71%)
 Frame = -2

Query: 246 EISTLYGRFWKIIYRTRQLLLTNTLEALVVGTVLGSIYINVGFDKQSIEKRXXXXXXXXX 67
           EI TL+ RFWKIIYRT+QLLLTNT EAL+VG VLG+IYIN+GFDK+ IEKR         
Sbjct: 334 EICTLFRRFWKIIYRTKQLLLTNTAEALLVGLVLGTIYINIGFDKEGIEKRFGLFAFTLT 393

Query: 66  XXXXXXXXXLPIFINERPIILR 1
                    LPIFINERPI+LR
Sbjct: 394 FLLSSTTETLPIFINERPILLR 415


>ref|XP_003556131.1| PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member
           8-like [Glycine max]
          Length = 601

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 52/82 (63%), Positives = 57/82 (69%)
 Frame = -2

Query: 246 EISTLYGRFWKIIYRTRQLLLTNTLEALVVGTVLGSIYINVGFDKQSIEKRXXXXXXXXX 67
           EI TLY RFWKIIYRTRQLLL NT EAL+VG VLG+IYIN+GFDK+ IEKR         
Sbjct: 326 EIFTLYSRFWKIIYRTRQLLLPNTAEALLVGLVLGTIYINIGFDKEGIEKRFGLFAFLSV 385

Query: 66  XXXXXXXXXLPIFINERPIILR 1
                    LPIFINER I+LR
Sbjct: 386 FLLSSTTETLPIFINERLILLR 407


>emb|CBI22616.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 50/82 (60%), Positives = 56/82 (68%)
 Frame = -2

Query: 246 EISTLYGRFWKIIYRTRQLLLTNTLEALVVGTVLGSIYINVGFDKQSIEKRXXXXXXXXX 67
           E+  LY RFWKI+YRTRQLLL N LEAL VG VLG+IYIN+GFDKQ +EKR         
Sbjct: 330 EVLALYNRFWKIVYRTRQLLLVNALEALGVGLVLGTIYINIGFDKQGMEKRLGLFAFTLT 389

Query: 66  XXXXXXXXXLPIFINERPIILR 1
                    LPIFINERPI+LR
Sbjct: 390 FLLSSTTETLPIFINERPILLR 411


Top