BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00040960
         (340 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003631269.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   102   4e-20
emb|CBI28530.3| unnamed protein product [Vitis vinifera]              102   4e-20
ref|XP_002514722.1| pentatricopeptide repeat-containing protein,...    96   4e-18
ref|XP_004138304.1| PREDICTED: pentatricopeptide repeat-containi...    92   3e-17
ref|XP_002318601.1| predicted protein [Populus trichocarpa] gi|2...    87   1e-15

>ref|XP_003631269.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g61370, mitochondrial-like [Vitis vinifera]
          Length = 505

 Score =  102 bits (253), Expect = 4e-20
 Identities = 45/73 (61%), Positives = 59/73 (80%)
 Frame = +1

Query: 121 ELCNIVSNGIGGLDELESSLNSSKALITPFLVTQVLDSCKNEVPTRRLLRFFSWSNKRPE 300
           ELCN+VSNG+G LD+LE+SL+   A  T  L++Q+LD+CKNE PTRRLLRFF WS+K+  
Sbjct: 42  ELCNVVSNGVGSLDDLEASLDRLDASFTSSLISQILDTCKNEAPTRRLLRFFLWSSKKFN 101

Query: 301 CRFEDGDFNHAIR 339
           C+ ED DFN+AI+
Sbjct: 102 CKLEDDDFNYAIQ 114


>emb|CBI28530.3| unnamed protein product [Vitis vinifera]
          Length = 452

 Score =  102 bits (253), Expect = 4e-20
 Identities = 45/73 (61%), Positives = 59/73 (80%)
 Frame = +1

Query: 121 ELCNIVSNGIGGLDELESSLNSSKALITPFLVTQVLDSCKNEVPTRRLLRFFSWSNKRPE 300
           ELCN+VSNG+G LD+LE+SL+   A  T  L++Q+LD+CKNE PTRRLLRFF WS+K+  
Sbjct: 11  ELCNVVSNGVGSLDDLEASLDRLDASFTSSLISQILDTCKNEAPTRRLLRFFLWSSKKFN 70

Query: 301 CRFEDGDFNHAIR 339
           C+ ED DFN+AI+
Sbjct: 71  CKLEDDDFNYAIQ 83


>ref|XP_002514722.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223546326|gb|EEF47828.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 479

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 45/76 (59%), Positives = 56/76 (73%)
 Frame = +1

Query: 112 DFNELCNIVSNGIGGLDELESSLNSSKALITPFLVTQVLDSCKNEVPTRRLLRFFSWSNK 291
           +  E+C  VS+ IGGLD+LESSLN  +  +T  +VTQV+D CK+E PTRRLLRFF WS K
Sbjct: 24  ELQEICKAVSSSIGGLDDLESSLNGFRGNLTSQIVTQVIDCCKHEAPTRRLLRFFLWSYK 83

Query: 292 RPECRFEDGDFNHAIR 339
           R +   +D DFNHAIR
Sbjct: 84  RLDFSMKDEDFNHAIR 99


>ref|XP_004138304.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61370,
           mitochondrial-like [Cucumis sativus]
           gi|449477571|ref|XP_004155060.1| PREDICTED:
           pentatricopeptide repeat-containing protein At5g61370,
           mitochondrial-like [Cucumis sativus]
          Length = 487

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 56/108 (51%), Positives = 64/108 (59%), Gaps = 5/108 (4%)
 Frame = +1

Query: 31  SLLKPKLTHIFTPTKLVFHFKHFSHSTDFN-----ELCNIVSNGIGGLDELESSLNSSKA 195
           SLLK K       +    H     HST  N     +LC ++S  IGGLDELESSLN    
Sbjct: 17  SLLKLKWDSFIAQSVCTQHRFCSLHSTVNNGAAVSKLCEVISCTIGGLDELESSLNKCTI 76

Query: 196 LITPFLVTQVLDSCKNEVPTRRLLRFFSWSNKRPECRFEDGDFNHAIR 339
            +T  LVTQV+DS KNE PTRRLLRFF WS K+     ED DFN+AIR
Sbjct: 77  SLTSSLVTQVIDSSKNEAPTRRLLRFFLWSLKKLNHTLEDEDFNNAIR 124


>ref|XP_002318601.1| predicted protein [Populus trichocarpa] gi|222859274|gb|EEE96821.1|
           predicted protein [Populus trichocarpa]
          Length = 485

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 42/84 (50%), Positives = 58/84 (69%), Gaps = 1/84 (1%)
 Frame = +1

Query: 91  KHFSHSTDFNELCNIVSNGIGGLDELESSLNSSKALITPFLVTQVLDSCKNEVPTRRLLR 270
           +H     +  E C ++S+ IGGLD+LE SLN  K  +T  LVTQ+++SCK+E P+RR+LR
Sbjct: 32  QHNQLPLELQEACKVISSWIGGLDDLELSLNQFKGQLTYPLVTQIINSCKHEAPSRRILR 91

Query: 271 FFSWSNKRPEC-RFEDGDFNHAIR 339
           FF WSNK  +  + +D DFNH IR
Sbjct: 92  FFLWSNKVLDSEKLKDDDFNHVIR 115