BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00040922
         (325 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN83285.1| hypothetical protein VITISV_004139 [Vitis vinifera]    96   4e-29
gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 proteas...   104   6e-29
emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]          99   1e-27
gb|AAD43604.1|AC005698_3 T3P18.3 [Arabidopsis thaliana]                99   1e-27
emb|CAB40035.1| retrotransposon like protein [Arabidopsis thalia...    96   2e-27

>emb|CAN83285.1| hypothetical protein VITISV_004139 [Vitis vinifera]
          Length = 1556

 Score = 95.9 bits (237), Expect(2) = 4e-29
 Identities = 45/72 (62%), Positives = 54/72 (75%)
 Frame = -3

Query: 323  EIFNRVV*SASIRNVLTIATIKRWHIRQLDVKNAFLHGHLQEPVFMEQPPGFIDPTKPTH 144
            E F+ V+   +IR VLTIA +K+W IRQLDVKNAFLHG + E + MEQPPG  D   PTH
Sbjct: 1084 ETFSPVIKPGTIRMVLTIALVKKWPIRQLDVKNAFLHGLISEDIHMEQPPGMADLEHPTH 1143

Query: 143  VCKLNRAIYGLK 108
            VCKL +A+YGLK
Sbjct: 1144 VCKLQKALYGLK 1155



 Score = 57.4 bits (137), Expect(2) = 4e-29
 Identities = 26/34 (76%), Positives = 29/34 (85%)
 Frame = -1

Query: 106  QAPRAWFDRFSLFLLELGFFCSIADSSLFIHCSS 5
            QAPRAWFDRFS FLL+ GFFCS+AD SLFI  S+
Sbjct: 1156 QAPRAWFDRFSAFLLKYGFFCSLADPSLFIFHSN 1189


>gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 protease homolog from
            Arabidopsis thaliana BAC gb|AF080119 and is a member of
            the reverse transcriptase family PF|00078 [Arabidopsis
            thaliana]
          Length = 1415

 Score =  104 bits (259), Expect(2) = 6e-29
 Identities = 50/72 (69%), Positives = 58/72 (80%)
 Frame = -3

Query: 323  EIFNRVV*SASIRNVLTIATIKRWHIRQLDVKNAFLHGHLQEPVFMEQPPGFIDPTKPTH 144
            E F+ VV +A+IR VL ++T K W I+QLDV NAFLHG LQEPVFM QP GFIDP KPTH
Sbjct: 939  ETFSPVVRTATIRLVLDVSTSKGWPIKQLDVSNAFLHGELQEPVFMYQPSGFIDPQKPTH 998

Query: 143  VCKLNRAIYGLK 108
            VC+L +AIYGLK
Sbjct: 999  VCRLTKAIYGLK 1010



 Score = 48.1 bits (113), Expect(2) = 6e-29
 Identities = 21/30 (70%), Positives = 24/30 (80%)
 Frame = -1

Query: 106  QAPRAWFDRFSLFLLELGFFCSIADSSLFI 17
            QAPRAWFD FS FLL+ GF CS +D SLF+
Sbjct: 1011 QAPRAWFDTFSNFLLDYGFVCSKSDPSLFV 1040


>emb|CAC37623.1| copia-like polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score = 99.4 bits (246), Expect(2) = 1e-27
 Identities = 46/72 (63%), Positives = 55/72 (76%)
 Frame = -3

Query: 323  EIFNRVV*SASIRNVLTIATIKRWHIRQLDVKNAFLHGHLQEPVFMEQPPGFIDPTKPTH 144
            E F+ VV +A+IR VL  AT   W ++QLDV NAFLHG LQEPVFM QP GF+DP KP H
Sbjct: 957  ETFSPVVRTATIRLVLDTATANEWPLKQLDVSNAFLHGELQEPVFMFQPSGFVDPNKPNH 1016

Query: 143  VCKLNRAIYGLK 108
            VC+L +A+YGLK
Sbjct: 1017 VCRLTKALYGLK 1028



 Score = 48.5 bits (114), Expect(2) = 1e-27
 Identities = 21/30 (70%), Positives = 24/30 (80%)
 Frame = -1

Query: 106  QAPRAWFDRFSLFLLELGFFCSIADSSLFI 17
            QAPRAWFD FS FLL+ GF CS +D SLF+
Sbjct: 1029 QAPRAWFDTFSNFLLDFGFECSTSDPSLFV 1058


>gb|AAD43604.1|AC005698_3 T3P18.3 [Arabidopsis thaliana]
          Length = 1309

 Score = 99.4 bits (246), Expect(2) = 1e-27
 Identities = 46/72 (63%), Positives = 55/72 (76%)
 Frame = -3

Query: 323  EIFNRVV*SASIRNVLTIATIKRWHIRQLDVKNAFLHGHLQEPVFMEQPPGFIDPTKPTH 144
            E F+ VV +A+IR VL  AT   W ++QLDV NAFLHG LQEPVFM QP GF+DP KP H
Sbjct: 800  ETFSPVVRTATIRLVLDTATANEWPLKQLDVSNAFLHGELQEPVFMFQPSGFVDPNKPNH 859

Query: 143  VCKLNRAIYGLK 108
            VC+L +A+YGLK
Sbjct: 860  VCRLTKALYGLK 871



 Score = 48.5 bits (114), Expect(2) = 1e-27
 Identities = 21/30 (70%), Positives = 24/30 (80%)
 Frame = -1

Query: 106 QAPRAWFDRFSLFLLELGFFCSIADSSLFI 17
           QAPRAWFD FS FLL+ GF CS +D SLF+
Sbjct: 872 QAPRAWFDTFSNFLLDFGFECSTSDPSLFV 901


>emb|CAB40035.1| retrotransposon like protein [Arabidopsis thaliana]
            gi|7267767|emb|CAB81170.1| retrotransposon like protein
            [Arabidopsis thaliana]
          Length = 1515

 Score = 96.3 bits (238), Expect(2) = 2e-27
 Identities = 43/72 (59%), Positives = 58/72 (80%)
 Frame = -3

Query: 323  EIFNRVV*SASIRNVLTIATIKRWHIRQLDVKNAFLHGHLQEPVFMEQPPGFIDPTKPTH 144
            E ++ VV SA++R++L +ATI +W ++QLDVKNAFLH  L+E VFM QPPGF DP++P +
Sbjct: 999  ETYSPVVRSATVRSILHVATINKWSLKQLDVKNAFLHDELKETVFMTQPPGFEDPSRPDY 1058

Query: 143  VCKLNRAIYGLK 108
            VCKL +AIY LK
Sbjct: 1059 VCKLKKAIYDLK 1070



 Score = 50.8 bits (120), Expect(2) = 2e-27
 Identities = 20/35 (57%), Positives = 27/35 (77%)
 Frame = -1

Query: 106  QAPRAWFDRFSLFLLELGFFCSIADSSLFIHCSSK 2
            QAPRAWFD+FS +LL+ GF CS +D SLF++   +
Sbjct: 1071 QAPRAWFDKFSSYLLKYGFICSFSDPSLFVYLKGR 1105