BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00040886
         (224 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA96650.1| retrotransposon protein, putative, unclassified [...    65   6e-09
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    63   2e-08
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...    62   4e-08
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    62   5e-08
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...    62   5e-08

>gb|ABA96650.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1100

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 28/72 (38%), Positives = 47/72 (65%)
 Frame = -3

Query: 222 EICLAVQSFFTSKILPYGLNSNFITLIPKERSASKLSQFRPICMGNFLLKIITKLMQKRL 43
           ++C AV+ FF  K++P G+N+  I LIPK++ + +L  FRPI + N + K++ K +   L
Sbjct: 583 DVCKAVKLFFDQKVMPEGVNTTAIVLIPKKKESKELKDFRPISLCNVIYKVVAKCLVNHL 642

Query: 42  NGIADRIITKEQ 7
             I + II++EQ
Sbjct: 643 RPILESIISQEQ 654


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 1223

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 31/72 (43%), Positives = 43/72 (59%)
 Frame = -3

Query: 222 EICLAVQSFFTSKILPYGLNSNFITLIPKERSASKLSQFRPICMGNFLLKIITKLMQKRL 43
           E  LAVQSFFT   LP G+NS  + LIPK+  A ++  +RPI   N L K+I+K++  RL
Sbjct: 491 EFTLAVQSFFTKGFLPKGINSTILALIPKKTEAREMKDYRPISCCNVLYKVISKIIANRL 550

Query: 42  NGIADRIITKEQ 7
             +  + I   Q
Sbjct: 551 KLVLPKFIAGNQ 562


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
           72.31) [Arabidopsis thaliana]
          Length = 928

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 29/72 (40%), Positives = 43/72 (59%)
 Frame = -3

Query: 222 EICLAVQSFFTSKILPYGLNSNFITLIPKERSASKLSQFRPICMGNFLLKIITKLMQKRL 43
           E  LA+QSFF    LP G+NS  + LIPK++ A ++  +RPI   N L K+I+K++  RL
Sbjct: 379 EFILAIQSFFAKGFLPKGINSTILALIPKKKEAKEMKDYRPISCCNVLYKVISKIIANRL 438

Query: 42  NGIADRIITKEQ 7
             +  + I   Q
Sbjct: 439 KLVLPKFIVGNQ 450


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease
           H; Endonuclease/exonuclease/phosphatase [Medicago
           truncatula]
          Length = 1246

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 33/74 (44%), Positives = 44/74 (59%)
 Frame = -3

Query: 222 EICLAVQSFFTSKILPYGLNSNFITLIPKERSASKLSQFRPICMGNFLLKIITKLMQKRL 43
           ++  +VQ FF S  L   +NSN I LIPK   A  +  +RPI + NF  KII+K++  RL
Sbjct: 480 DVIQSVQDFFISGQLAQNINSNLIVLIPKVPGARVMGDYRPIALANFQFKIISKILADRL 539

Query: 42  NGIADRIITKEQVG 1
             I  RII+ EQ G
Sbjct: 540 ADITMRIISVEQRG 553


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1216

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 29/72 (40%), Positives = 43/72 (59%)
 Frame = -3

Query: 222 EICLAVQSFFTSKILPYGLNSNFITLIPKERSASKLSQFRPICMGNFLLKIITKLMQKRL 43
           E+ +A+QSFF    LP G+NS  + LIPK++ A ++  +RPI   N L K I+K++  RL
Sbjct: 212 EVIIAIQSFFAKGFLPKGVNSTILALIPKKKEAREIKDYRPISCCNVLYKAISKILANRL 271

Query: 42  NGIADRIITKEQ 7
             I  + I   Q
Sbjct: 272 KRILPKFIVGNQ 283