BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00040778
         (337 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFB18499.1| NADH-plastoquinone oxidoreductase subunit 2, part...   129   4e-31
ref|YP_007476395.1| NdhB (chloroplast) [Trithuria inconspicua] g...   131   5e-29
gb|AAN32064.1| NADH dehydrogenase subunit B [Sisyrinchium montanum]   131   5e-29
gb|AAG26111.1| NADH dehydrogenase subunit B [Dioscorea bulbifera]     131   5e-29
gb|AAG26099.1| NADH dehydrogenase subunit B [Cabomba caroliniana]     131   5e-29

>gb|AFB18499.1| NADH-plastoquinone oxidoreductase subunit 2, partial [Pandanus
           utilis]
          Length = 510

 Score =  129 bits (324), Expect(2) = 4e-31
 Identities = 68/85 (80%), Positives = 68/85 (80%)
 Frame = -1

Query: 337 MILGNLIAITQTSMKRMLAXXXXXXXXXXXXXXXXGDSNDGYASMITYMLFYISMNLGTF 158
           MILGNLIAITQTSMKRMLA                GDSNDGYASMITYMLFYISMNLGTF
Sbjct: 307 MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGTF 366

Query: 157 ACIVSFGLRTGTDNIRDYAGLYTKD 83
           ACIV FGLRTGTDNIRDYAGLYTKD
Sbjct: 367 ACIVLFGLRTGTDNIRDYAGLYTKD 391



 Score = 30.4 bits (67), Expect(2) = 4e-31
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -3

Query: 80  FFGSLFSPMSLIP 42
           FFGSLFSPMSLIP
Sbjct: 393 FFGSLFSPMSLIP 405


>ref|YP_007476395.1| NdhB (chloroplast) [Trithuria inconspicua]
           gi|456331060|ref|YP_007476420.1| NdhB (chloroplast)
           [Trithuria inconspicua] gi|449713886|emb|CCJ32562.1|
           NdhB (chloroplast) [Trithuria inconspicua]
           gi|449713911|emb|CCJ32587.1| NdhB (chloroplast)
           [Trithuria inconspicua]
          Length = 513

 Score =  131 bits (330), Expect = 5e-29
 Identities = 69/85 (81%), Positives = 69/85 (81%)
 Frame = -1

Query: 337 MILGNLIAITQTSMKRMLAXXXXXXXXXXXXXXXXGDSNDGYASMITYMLFYISMNLGTF 158
           MILGNLIAITQTSMKRMLA                GDSNDGYASMITYMLFYISMNLGTF
Sbjct: 308 MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGTF 367

Query: 157 ACIVSFGLRTGTDNIRDYAGLYTKD 83
           ACIVSFGLRTGTDNIRDYAGLYTKD
Sbjct: 368 ACIVSFGLRTGTDNIRDYAGLYTKD 392


>gb|AAN32064.1| NADH dehydrogenase subunit B [Sisyrinchium montanum]
          Length = 492

 Score =  131 bits (330), Expect = 5e-29
 Identities = 69/85 (81%), Positives = 69/85 (81%)
 Frame = -1

Query: 337 MILGNLIAITQTSMKRMLAXXXXXXXXXXXXXXXXGDSNDGYASMITYMLFYISMNLGTF 158
           MILGNLIAITQTSMKRMLA                GDSNDGYASMITYMLFYISMNLGTF
Sbjct: 289 MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGTF 348

Query: 157 ACIVSFGLRTGTDNIRDYAGLYTKD 83
           ACIVSFGLRTGTDNIRDYAGLYTKD
Sbjct: 349 ACIVSFGLRTGTDNIRDYAGLYTKD 373


>gb|AAG26111.1| NADH dehydrogenase subunit B [Dioscorea bulbifera]
          Length = 480

 Score =  131 bits (330), Expect = 5e-29
 Identities = 69/85 (81%), Positives = 69/85 (81%)
 Frame = -1

Query: 337 MILGNLIAITQTSMKRMLAXXXXXXXXXXXXXXXXGDSNDGYASMITYMLFYISMNLGTF 158
           MILGNLIAITQTSMKRMLA                GDSNDGYASMITYMLFYISMNLGTF
Sbjct: 307 MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGTF 366

Query: 157 ACIVSFGLRTGTDNIRDYAGLYTKD 83
           ACIVSFGLRTGTDNIRDYAGLYTKD
Sbjct: 367 ACIVSFGLRTGTDNIRDYAGLYTKD 391


>gb|AAG26099.1| NADH dehydrogenase subunit B [Cabomba caroliniana]
          Length = 486

 Score =  131 bits (330), Expect = 5e-29
 Identities = 69/85 (81%), Positives = 69/85 (81%)
 Frame = -1

Query: 337 MILGNLIAITQTSMKRMLAXXXXXXXXXXXXXXXXGDSNDGYASMITYMLFYISMNLGTF 158
           MILGNLIAITQTSMKRMLA                GDSNDGYASMITYMLFYISMNLGTF
Sbjct: 307 MILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYISMNLGTF 366

Query: 157 ACIVSFGLRTGTDNIRDYAGLYTKD 83
           ACIVSFGLRTGTDNIRDYAGLYTKD
Sbjct: 367 ACIVSFGLRTGTDNIRDYAGLYTKD 391