BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00040566
         (266 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containi...   105   5e-21
ref|XP_002525572.1| pentatricopeptide repeat-containing protein,...    98   6e-19
gb|AAS99720.1| At2g19280 [Arabidopsis thaliana] gi|62319953|dbj|...    85   7e-15
ref|NP_179518.1| pentatricopeptide repeat-containing protein [Ar...    85   7e-15
ref|XP_002886049.1| pentatricopeptide repeat-containing protein ...    84   2e-14

>ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containing protein At2g19280
           [Vitis vinifera]
          Length = 644

 Score =  105 bits (261), Expect = 5e-21
 Identities = 51/82 (62%), Positives = 66/82 (80%)
 Frame = -2

Query: 247 KLFVEMQNYGIKPDVVAYTIVIDAICKMGLLKEATSMLFKMTRTGYLPDSVAVASVVNGY 68
           KL +EM+  GIKPDVVAYTIVID++CKM LLKEATS+LFKMT+ G   DSV+V+SVV+GY
Sbjct: 242 KLLMEMKYLGIKPDVVAYTIVIDSLCKMSLLKEATSILFKMTQMGVFLDSVSVSSVVDGY 301

Query: 67  CVRGRLNEAVTVLKIFGFADNV 2
           C  G+  EA+ VL++F  + N+
Sbjct: 302 CKVGKSEEAMDVLEVFNLSPNI 323



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 27/74 (36%), Positives = 44/74 (59%)
 Frame = -2

Query: 262 LASACKLFVEMQNYGIKPDVVAYTIVIDAICKMGLLKEATSMLFKMTRTGYLPDSVAVAS 83
           L  A +L   M++ G+ PD+V Y I+I  + K GL+ EA  +L ++TR G+ PD V   +
Sbjct: 444 LQKAFELLSMMRSAGVSPDLVTYNILIHGLIKRGLVNEAKDILDELTRRGFSPDVVTFTN 503

Query: 82  VVNGYCVRGRLNEA 41
           ++ G+  +G   EA
Sbjct: 504 IIGGFSNKGNFEEA 517



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 27/80 (33%), Positives = 48/80 (60%)
 Frame = -2

Query: 262 LASACKLFVEMQNYGIKPDVVAYTIVIDAICKMGLLKEATSMLFKMTRTGYLPDSVAVAS 83
           +++A K   +M   GI+P V  YT++ID+ CK G ++ A  +  +M   G +PD V+  +
Sbjct: 374 ISNALKYLGKMLKRGIRPSVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVVSYNT 433

Query: 82  VVNGYCVRGRLNEAVTVLKI 23
           ++NGY  +G L +A  +L +
Sbjct: 434 LMNGYGKKGHLQKAFELLSM 453


>ref|XP_002525572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535151|gb|EEF36831.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 687

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 45/87 (51%), Positives = 64/87 (73%)
 Frame = -2

Query: 262 LASACKLFVEMQNYGIKPDVVAYTIVIDAICKMGLLKEATSMLFKMTRTGYLPDSVAVAS 83
           + S  K+ +EM+NYGIK DV+AYTIVIDA+CK+  +K ATS+LFKM   G   DSV+V+S
Sbjct: 270 IQSGWKILMEMKNYGIKADVIAYTIVIDALCKISCVKVATSLLFKMIHCGISVDSVSVSS 329

Query: 82  VVNGYCVRGRLNEAVTVLKIFGFADNV 2
           V++GYC +GR ++A+ +L  F    N+
Sbjct: 330 VIDGYCKKGRSDKAINLLNFFNVRPNI 356


>gb|AAS99720.1| At2g19280 [Arabidopsis thaliana] gi|62319953|dbj|BAD94048.1|
           putative salt-inducible protein [Arabidopsis thaliana]
           gi|110738808|dbj|BAF01327.1| putative salt-inducible
           protein [Arabidopsis thaliana]
          Length = 693

 Score = 84.7 bits (208), Expect = 7e-15
 Identities = 38/82 (46%), Positives = 59/82 (71%)
 Frame = -2

Query: 247 KLFVEMQNYGIKPDVVAYTIVIDAICKMGLLKEATSMLFKMTRTGYLPDSVAVASVVNGY 68
           +L + M++YGI+PD+VA+T+ ID +CK G LKEATS+LFK+   G   DSV+V+SV++G+
Sbjct: 292 ELLMGMKHYGIRPDIVAFTVFIDKLCKAGFLKEATSVLFKLKLFGISQDSVSVSSVIDGF 351

Query: 67  CVRGRLNEAVTVLKIFGFADNV 2
           C  G+  EA+ ++  F    N+
Sbjct: 352 CKVGKPEEAIKLIHSFRLRPNI 373


>ref|NP_179518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|334184304|ref|NP_001189552.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
           gi|218546774|sp|Q6NKW7.2|PP164_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g19280 gi|3135258|gb|AAC16458.1| putative
           salt-inducible protein [Arabidopsis thaliana]
           gi|330251769|gb|AEC06863.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
           gi|330251770|gb|AEC06864.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 693

 Score = 84.7 bits (208), Expect = 7e-15
 Identities = 38/82 (46%), Positives = 59/82 (71%)
 Frame = -2

Query: 247 KLFVEMQNYGIKPDVVAYTIVIDAICKMGLLKEATSMLFKMTRTGYLPDSVAVASVVNGY 68
           +L + M++YGI+PD+VA+T+ ID +CK G LKEATS+LFK+   G   DSV+V+SV++G+
Sbjct: 292 ELLMGMKHYGIRPDIVAFTVFIDKLCKAGFLKEATSVLFKLKLFGISQDSVSVSSVIDGF 351

Query: 67  CVRGRLNEAVTVLKIFGFADNV 2
           C  G+  EA+ ++  F    N+
Sbjct: 352 CKVGKPEEAIKLIHSFRLRPNI 373


>ref|XP_002886049.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297331889|gb|EFH62308.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 755

 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 37/82 (45%), Positives = 59/82 (71%)
 Frame = -2

Query: 247 KLFVEMQNYGIKPDVVAYTIVIDAICKMGLLKEATSMLFKMTRTGYLPDSVAVASVVNGY 68
           +L + M++YGI+PD+VA+T+ ID +CK G L+EATS+LFK+   G   DSV+V+SV++G+
Sbjct: 359 ELLMGMKDYGIRPDIVAFTVFIDKLCKAGFLREATSVLFKLKLFGISQDSVSVSSVIDGF 418

Query: 67  CVRGRLNEAVTVLKIFGFADNV 2
           C  G+  EA+ ++  F    N+
Sbjct: 419 CKVGKPEEAIKLIHSFRLRPNI 440