BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00040559
         (261 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003603974.1| Pentatricopeptide repeat-containing protein ...   123   1e-26
ref|XP_003523513.1| PREDICTED: pentatricopeptide repeat-containi...   122   3e-26
ref|XP_003543566.1| PREDICTED: pentatricopeptide repeat-containi...   121   5e-26
ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containi...   121   7e-26
gb|AAS79604.1| putative pentatricopeptide repeat-containing prot...   108   5e-22

>ref|XP_003603974.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355493022|gb|AES74225.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 566

 Score =  123 bits (309), Expect = 1e-26
 Identities = 54/85 (63%), Positives = 67/85 (78%)
 Frame = -1

Query: 261 VVWRNLIWACKMHGDHDRGDRLMNQNQLLQMDSSDSGSYVLYGNVYASNGNWCEKAKVRE 82
           V+WR LIWACK+H D +R +RLM   +L  M + DSGSY+L  NVYAS G WC+KA+VRE
Sbjct: 362 VIWRTLIWACKVHADTERAERLMKHLELQGMSAHDSGSYILASNVYASTGKWCDKAEVRE 421

Query: 81  LINKKGLTKPKGSSRIEVKGIIHKF 7
           L+NKKGL KP GSSRIEV G++H+F
Sbjct: 422 LMNKKGLVKPPGSSRIEVDGVVHEF 446


>ref|XP_003523513.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 542

 Score =  122 bits (306), Expect = 3e-26
 Identities = 54/85 (63%), Positives = 66/85 (77%)
 Frame = -1

Query: 261 VVWRNLIWACKMHGDHDRGDRLMNQNQLLQMDSSDSGSYVLYGNVYASNGNWCEKAKVRE 82
           V+WR LIWACK+HGD DR +RLM   ++  M + DSGSY+L  NVYAS G WC KA+VRE
Sbjct: 338 VLWRTLIWACKVHGDDDRAERLMKHLEIQDMRADDSGSYILTSNVYASTGKWCNKAEVRE 397

Query: 81  LINKKGLTKPKGSSRIEVKGIIHKF 7
           L+NKKGL KP GSSRIE+ G +H+F
Sbjct: 398 LMNKKGLVKPLGSSRIEIDGGVHEF 422


>ref|XP_003543566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 572

 Score =  121 bits (304), Expect = 5e-26
 Identities = 54/85 (63%), Positives = 66/85 (77%)
 Frame = -1

Query: 261 VVWRNLIWACKMHGDHDRGDRLMNQNQLLQMDSSDSGSYVLYGNVYASNGNWCEKAKVRE 82
           V+WR LIWACK+HGD DR +RLM   ++  M + DSGSY+L  NVYAS G WC KA+VRE
Sbjct: 368 VLWRTLIWACKVHGDADRAERLMKHLEIQDMRADDSGSYILASNVYASTGKWCNKAEVRE 427

Query: 81  LINKKGLTKPKGSSRIEVKGIIHKF 7
           L+NKKGL KP G+SRIEV G +H+F
Sbjct: 428 LMNKKGLVKPPGTSRIEVDGGVHEF 452


>ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera] gi|297744424|emb|CBI37686.3| unnamed
           protein product [Vitis vinifera]
          Length = 571

 Score =  121 bits (303), Expect = 7e-26
 Identities = 56/87 (64%), Positives = 69/87 (79%)
 Frame = -1

Query: 261 VVWRNLIWACKMHGDHDRGDRLMNQNQLLQMDSSDSGSYVLYGNVYASNGNWCEKAKVRE 82
           V+WR LIWA K+HGD DR ++LM    LL+MDS D GSYVL GNVYAS G W +KAK+RE
Sbjct: 367 VLWRTLIWASKVHGDIDRSEQLMKDRGLLKMDSDDCGSYVLLGNVYASAGKWHDKAKMRE 426

Query: 81  LINKKGLTKPKGSSRIEVKGIIHKFFA 1
           L+N+KGL+KP G SRIEV G++H+F A
Sbjct: 427 LMNQKGLSKPPGCSRIEVDGLVHEFAA 453


>gb|AAS79604.1| putative pentatricopeptide repeat-containing protein [Ipomoea
           trifida] gi|118562903|dbj|BAF37793.1| hypothetical
           protein [Ipomoea trifida]
          Length = 575

 Score =  108 bits (270), Expect = 5e-22
 Identities = 49/87 (56%), Positives = 65/87 (74%)
 Frame = -1

Query: 261 VVWRNLIWACKMHGDHDRGDRLMNQNQLLQMDSSDSGSYVLYGNVYASNGNWCEKAKVRE 82
           V+WR LIW CK+ GD +R +RL+ + +LL MDS D+GSYVL  NVYA+ G W EKAK RE
Sbjct: 371 VLWRTLIWGCKILGDVERSERLVRELELLNMDSRDTGSYVLLENVYAATGKWEEKAKTRE 430

Query: 81  LINKKGLTKPKGSSRIEVKGIIHKFFA 1
           L+ ++GL KP   SRIE+ G++H+F A
Sbjct: 431 LMYQRGLMKPPACSRIEIDGVVHEFTA 457