BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00040107
         (314 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]   139   2e-31
ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containi...   136   2e-30
ref|XP_002520950.1| pentatricopeptide repeat-containing protein,...   127   9e-28
ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containi...   123   2e-26
ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containi...   119   3e-25

>emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  139 bits (351), Expect = 2e-31
 Identities = 66/104 (63%), Positives = 79/104 (75%)
 Frame = +3

Query: 3   FTWNAMIGAFVSNGEPLGAVELFKEMRVLDVLVDAVTFPSVLKACGVLKDLDYGREVHGL 182
           FTWNAMIGA+V+NGEPLG++EL++EMRV  + +DA TFP +LKACG+LKD  YG EVHGL
Sbjct: 146 FTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGL 205

Query: 183 AVKSGXXXXXXXXXXLVAMYAKCDDFNGARVLFDRMTEKGDVVS 314
           A+K G          +V MY KC+D NGAR LFDRM EK DVVS
Sbjct: 206 AIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVS 249



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 32/98 (32%), Positives = 50/98 (51%)
 Frame = +3

Query: 6   TWNAMIGAFVSNGEPLGAVELFKEMRVLDVLVDAVTFPSVLKACGVLKDLDYGREVHGLA 185
           +W +MI  +V NG    A+ELF  M+   V  D+++  S+L A   L  L  G+E+HG  
Sbjct: 551 SWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFL 610

Query: 186 VKSGXXXXXXXXXXLVAMYAKCDDFNGARVLFDRMTEK 299
           ++ G          LV MYA+C     +R +F+ +  K
Sbjct: 611 IRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNK 648



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 30/97 (30%), Positives = 48/97 (49%)
 Frame = +3

Query: 6   TWNAMIGAFVSNGEPLGAVELFKEMRVLDVLVDAVTFPSVLKACGVLKDLDYGREVHGLA 185
           +WN+MI A+ SNG+ + A+ LF EM+   +  +  TF + L+AC     +  G  +H   
Sbjct: 249 SWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATV 308

Query: 186 VKSGXXXXXXXXXXLVAMYAKCDDFNGARVLFDRMTE 296
           +KS           L+AMYA+      A  +F  M +
Sbjct: 309 LKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDD 345



 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 34/103 (33%), Positives = 51/103 (49%)
 Frame = +3

Query: 6   TWNAMIGAFVSNGEPLGAVELFKEMRVLDVLVDAVTFPSVLKACGVLKDLDYGREVHGLA 185
           +WN+M+  FV NG    A++ + EMR      D V   S++ A     +  +G ++H  A
Sbjct: 350 SWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYA 409

Query: 186 VKSGXXXXXXXXXXLVAMYAKCDDFNGARVLFDRMTEKGDVVS 314
           +K+G          LV MYAK         +FD+M +K DVVS
Sbjct: 410 MKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDK-DVVS 451


>ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  136 bits (342), Expect = 2e-30
 Identities = 65/104 (62%), Positives = 78/104 (75%)
 Frame = +3

Query: 3   FTWNAMIGAFVSNGEPLGAVELFKEMRVLDVLVDAVTFPSVLKACGVLKDLDYGREVHGL 182
           FTWNAMIGA+V+NGEPLG++EL++EMRV  + +DA TFP +LKACG+LKD   G EVHGL
Sbjct: 182 FTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGL 241

Query: 183 AVKSGXXXXXXXXXXLVAMYAKCDDFNGARVLFDRMTEKGDVVS 314
           A+K G          +V MY KC+D NGAR LFDRM EK DVVS
Sbjct: 242 AIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVS 285



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 32/98 (32%), Positives = 50/98 (51%)
 Frame = +3

Query: 6   TWNAMIGAFVSNGEPLGAVELFKEMRVLDVLVDAVTFPSVLKACGVLKDLDYGREVHGLA 185
           +W +MI  +V NG    A+ELF  M+   V  D+++  S+L A   L  L  G+E+HG  
Sbjct: 587 SWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFL 646

Query: 186 VKSGXXXXXXXXXXLVAMYAKCDDFNGARVLFDRMTEK 299
           ++ G          LV MYA+C     +R +F+ +  K
Sbjct: 647 IRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNK 684



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 30/97 (30%), Positives = 48/97 (49%)
 Frame = +3

Query: 6   TWNAMIGAFVSNGEPLGAVELFKEMRVLDVLVDAVTFPSVLKACGVLKDLDYGREVHGLA 185
           +WN+MI A+ SNG+ + A+ LF EM+   +  +  TF + L+AC     +  G  +H   
Sbjct: 285 SWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATV 344

Query: 186 VKSGXXXXXXXXXXLVAMYAKCDDFNGARVLFDRMTE 296
           +KS           L+AMYA+      A  +F  M +
Sbjct: 345 LKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDD 381


>ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539787|gb|EEF41367.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 835

 Score =  127 bits (319), Expect = 9e-28
 Identities = 61/104 (58%), Positives = 77/104 (74%)
 Frame = +3

Query: 3   FTWNAMIGAFVSNGEPLGAVELFKEMRVLDVLVDAVTFPSVLKACGVLKDLDYGREVHGL 182
           FTWNAM+G +VSNGE LGA+E+++EMR L V  D+ TFP +LKACG+++DL  G E+HGL
Sbjct: 24  FTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTFPVLLKACGIVEDLFCGAEIHGL 83

Query: 183 AVKSGXXXXXXXXXXLVAMYAKCDDFNGARVLFDRMTEKGDVVS 314
           A+K G          LVA+YAKC+D NGAR LFDRM  + DVVS
Sbjct: 84  AIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVS 127



 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 36/103 (34%), Positives = 55/103 (53%)
 Frame = +3

Query: 6   TWNAMIGAFVSNGEPLGAVELFKEMRVLDVLVDAVTFPSVLKACGVLKDLDYGREVHGLA 185
           TWN+M+  F+ NG    A+E F +++  D+  D V+  S++ A G L  L  G+E+H  A
Sbjct: 228 TWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYA 287

Query: 186 VKSGXXXXXXXXXXLVAMYAKCDDFNGARVLFDRMTEKGDVVS 314
           +K+G          L+ MYAKC   +     FD M  K D++S
Sbjct: 288 IKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHK-DLIS 329



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 31/92 (33%), Positives = 45/92 (48%)
 Frame = +3

Query: 6   TWNAMIGAFVSNGEPLGAVELFKEMRVLDVLVDAVTFPSVLKACGVLKDLDYGREVHGLA 185
           +W +MI  +V NG    A+E+F  M+   +  D VT  S+L A   L  L  G+E+HG  
Sbjct: 429 SWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFI 488

Query: 186 VKSGXXXXXXXXXXLVAMYAKCDDFNGARVLF 281
           ++ G          LV MYA+C     A  +F
Sbjct: 489 IRKGFILEGSISNTLVDMYARCGSVEDAYKIF 520



 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 33/103 (32%), Positives = 51/103 (49%)
 Frame = +3

Query: 6   TWNAMIGAFVSNGEPLGAVELFKEMRVLDVLVDAVTFPSVLKACGVLKDLDYGREVHGLA 185
           +WN++I A+  NG    A+ LF EM    V+ +  TF + L+AC     +  G ++H   
Sbjct: 127 SWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAI 186

Query: 186 VKSGXXXXXXXXXXLVAMYAKCDDFNGARVLFDRMTEKGDVVS 314
           +KSG          LVAMY +      A V+F  +  K D+V+
Sbjct: 187 LKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGK-DIVT 228


>ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  123 bits (308), Expect = 2e-26
 Identities = 64/105 (60%), Positives = 74/105 (70%), Gaps = 1/105 (0%)
 Frame = +3

Query: 3   FTWNAMIGAFVSNGEPLGAVELFKEMRVLDVLVDAVTFPSVLKACGVLKDLDYGREVHGL 182
           FTWNAM+GAFVS+G+ L A+EL+KEMRVL V +DA TFPSVLKACG L +   G E+HG+
Sbjct: 111 FTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGV 170

Query: 183 AVKSGXXXXXXXXXXLVAMYAKCDDFNGARVLFDR-MTEKGDVVS 314
           AVK G          L+AMY KC D  GARVLFD  M EK D VS
Sbjct: 171 AVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVS 215



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 30/98 (30%), Positives = 49/98 (50%)
 Frame = +3

Query: 6   TWNAMIGAFVSNGEPLGAVELFKEMRVLDVLVDAVTFPSVLKACGVLKDLDYGREVHGLA 185
           +W +MI   V NG P+ A+ELF  ++  ++  D++   S L A   L  L  G+E+HG  
Sbjct: 517 SWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFL 576

Query: 186 VKSGXXXXXXXXXXLVAMYAKCDDFNGARVLFDRMTEK 299
           ++ G          LV MYA C     +R +F  + ++
Sbjct: 577 IRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQR 614



 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 31/95 (32%), Positives = 48/95 (50%)
 Frame = +3

Query: 6   TWNAMIGAFVSNGEPLGAVELFKEMRVLDVLVDAVTFPSVLKACGVLKDLDYGREVHGLA 185
           +WN++I A V+ G+ L A+ LF+ M+ + V  +  TF + L+       +  G  +HG A
Sbjct: 215 SWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAA 274

Query: 186 VKSGXXXXXXXXXXLVAMYAKCDDFNGARVLFDRM 290
           +KS           L+AMYAKC     A  +F  M
Sbjct: 275 LKSNHFADVYVANALIAMYAKCGRMEDAERVFASM 309


>ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  119 bits (298), Expect = 3e-25
 Identities = 61/105 (58%), Positives = 74/105 (70%), Gaps = 1/105 (0%)
 Frame = +3

Query: 3   FTWNAMIGAFVSNGEPLGAVELFKEMRVLDVLVDAVTFPSVLKACGVLKDLDYGREVHGL 182
           F+WNA++GAFVS+G+ L A+EL+K+MRVL V +DA TFPSVLKACG L +   G E+HG+
Sbjct: 111 FSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGV 170

Query: 183 AVKSGXXXXXXXXXXLVAMYAKCDDFNGARVLFDR-MTEKGDVVS 314
           AVK G          L+AMY KC D  GARVLFD  M EK D VS
Sbjct: 171 AVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVS 215



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 30/98 (30%), Positives = 49/98 (50%)
 Frame = +3

Query: 6   TWNAMIGAFVSNGEPLGAVELFKEMRVLDVLVDAVTFPSVLKACGVLKDLDYGREVHGLA 185
           +W +MI   V NG P+ A+ELF  ++  ++  D++   S L A   L  L  G+E+HG  
Sbjct: 517 SWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFL 576

Query: 186 VKSGXXXXXXXXXXLVAMYAKCDDFNGARVLFDRMTEK 299
           ++ G          LV MYA C     +R +F  + ++
Sbjct: 577 IRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQR 614



 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 30/95 (31%), Positives = 47/95 (49%)
 Frame = +3

Query: 6   TWNAMIGAFVSNGEPLGAVELFKEMRVLDVLVDAVTFPSVLKACGVLKDLDYGREVHGLA 185
           +WN++I A V+ G  L A+ LF+ M+ + V  +  TF + L+       +  G  +HG  
Sbjct: 215 SWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAV 274

Query: 186 VKSGXXXXXXXXXXLVAMYAKCDDFNGARVLFDRM 290
           +KS           L+AMYAKC     A  +F+ M
Sbjct: 275 LKSNHFADVYVANALIAMYAKCGRMEDAGRVFESM 309