BLASTX nr result
ID: Coptis21_contig00040000
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00040000 (341 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|73210... 55 2e-06 gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas... 56 3e-06 >emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|7321072|emb|CAB82119.1| putative protein [Arabidopsis thaliana] Length = 947 Score = 55.5 bits (132), Expect(2) = 2e-06 Identities = 28/68 (41%), Positives = 39/68 (57%) Frame = -2 Query: 340 FFLGSYGDTKRIHFVNWLSCTLPLHLGGLGIHNSE*SNIANLCRIAW*VLNQFTSLWAIL 161 F LGS + K++H V W LP GGLGI S+ N A + ++ W ++N SLWA + Sbjct: 502 FLLGSSAEKKKLHLVAWDRVCLPKSEGGLGIRTSKCMNKALVSKVGWRLINDRYSLWARI 561 Query: 160 LTAKYGRG 137 L +KY G Sbjct: 562 LRSKYRVG 569 Score = 20.8 bits (42), Expect(2) = 2e-06 Identities = 6/17 (35%), Positives = 9/17 (52%) Frame = -1 Query: 56 RWLTNKGTHVLFLLNKW 6 RW+ G +LF + W Sbjct: 579 RWVVGNGRDILFWSDNW 595 >gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H [Medicago truncatula] Length = 1296 Score = 55.8 bits (133), Expect = 3e-06 Identities = 27/69 (39%), Positives = 37/69 (53%) Frame = -2 Query: 337 FLGSYGDTKRIHFVNWLSCTLPLHLGGLGIHNSE*SNIANLCRIAW*VLNQFTSLWAILL 158 FL + K IH VNW + T P +GGLGI ++ +NI L ++ W ++ LW LL Sbjct: 827 FLWKGSNNKGIHLVNWKTITRPKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVNLL 886 Query: 157 TAKYGRGNS 131 KY G S Sbjct: 887 AKKYSSGTS 895