BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00040000
         (341 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|73210...    55   2e-06
gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas...    56   3e-06

>emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|7321072|emb|CAB82119.1|
           putative protein [Arabidopsis thaliana]
          Length = 947

 Score = 55.5 bits (132), Expect(2) = 2e-06
 Identities = 28/68 (41%), Positives = 39/68 (57%)
 Frame = -2

Query: 340 FFLGSYGDTKRIHFVNWLSCTLPLHLGGLGIHNSE*SNIANLCRIAW*VLNQFTSLWAIL 161
           F LGS  + K++H V W    LP   GGLGI  S+  N A + ++ W ++N   SLWA +
Sbjct: 502 FLLGSSAEKKKLHLVAWDRVCLPKSEGGLGIRTSKCMNKALVSKVGWRLINDRYSLWARI 561

Query: 160 LTAKYGRG 137
           L +KY  G
Sbjct: 562 LRSKYRVG 569



 Score = 20.8 bits (42), Expect(2) = 2e-06
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = -1

Query: 56  RWLTNKGTHVLFLLNKW 6
           RW+   G  +LF  + W
Sbjct: 579 RWVVGNGRDILFWSDNW 595


>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
            [Medicago truncatula]
          Length = 1296

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 27/69 (39%), Positives = 37/69 (53%)
 Frame = -2

Query: 337  FLGSYGDTKRIHFVNWLSCTLPLHLGGLGIHNSE*SNIANLCRIAW*VLNQFTSLWAILL 158
            FL    + K IH VNW + T P  +GGLGI ++  +NI  L ++ W ++     LW  LL
Sbjct: 827  FLWKGSNNKGIHLVNWKTITRPKSIGGLGIRSARDANICLLGKLVWDMVQSTNKLWVNLL 886

Query: 157  TAKYGRGNS 131
              KY  G S
Sbjct: 887  AKKYSSGTS 895