BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00039929
         (402 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...    61   8e-08
emb|CAE01742.2| OSJNBb0056F09.5 [Oryza sativa Japonica Group]          57   2e-06
gb|AAO13467.1| Putative retrovirus-related pol polyprotein [Oryz...    57   2e-06
gb|ABD96963.1| hypothetical protein [Cleome spinosa]                   55   6e-06
emb|CAN66743.1| hypothetical protein VITISV_043469 [Vitis vinifera]    55   8e-06

>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon
           TNT 1-94; Includes: RecName: Full=Protease; Includes:
           RecName: Full=Reverse transcriptase; Includes: RecName:
           Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
           protein product [Nicotiana tabacum]
          Length = 1328

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 41/113 (36%), Positives = 57/113 (50%), Gaps = 14/113 (12%)
 Frame = -1

Query: 402 SELYNIGVNLEEEDKARLLLKSVPPSCEHLITTLLYEKGTLELVEVTTHWCSTISRNEK* 223
           ++L N+GV +EEEDKA LLL S+P S ++L TT+L+ K T+EL +VT+         +K 
Sbjct: 130 TQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELKDVTSALLLNEKMRKKP 189

Query: 222 GQGG*LSCTRFIGVREPYNRS--------------NKGKSRKIECWKCGKAGH 106
              G    T   G    Y RS              N+ KSR   C+ C + GH
Sbjct: 190 ENQGQALITE--GRGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQPGH 240


>emb|CAE01742.2| OSJNBb0056F09.5 [Oryza sativa Japonica Group]
          Length = 371

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 3/101 (2%)
 Frame = -1

Query: 399 ELYNIGVNLEEEDKARLLLKSVPPSCEHLITTLLYEKGTLELVEVTTHWCSTISRNEK*G 220
           +L  + V L++EDKA +LL S+PPS EH++TTL++ K T++  E+ +   +   R  K  
Sbjct: 152 DLSKLDVKLDDEDKAIILLCSLPPSYEHVVTTLMHGKDTIKTEEIISSLLARDLRRSKKN 211

Query: 219 QGG*LSCTRFIGVREPYNRSN---KGKSRKIECWKCGKAGH 106
           +    S    + V+  ++      K K +   C+KC + GH
Sbjct: 212 EAMEASQAESLLVKAKHDHEAGVLKSKEKGARCYKCHEFGH 252


>gb|AAO13467.1| Putative retrovirus-related pol polyprotein [Oryza sativa Japonica
           Group] gi|108706491|gb|ABF94286.1| retrotransposon
           protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 556

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 3/101 (2%)
 Frame = -1

Query: 399 ELYNIGVNLEEEDKARLLLKSVPPSCEHLITTLLYEKGTLELVEVTTHWCSTISRNEK*G 220
           +L  + V L++EDKA +LL S+PPS EH++TTL + K T++  E+ +   +   R  K  
Sbjct: 263 DLSKLDVKLDDEDKAIILLCSLPPSFEHVVTTLTHGKDTVKTEEIISSLLARDLRRSKKN 322

Query: 219 QGG*LSCTRFIGVREPYNRS---NKGKSRKIECWKCGKAGH 106
           +    S    + V+  ++     +K K +   C+KC + GH
Sbjct: 323 EAMEASQAESLLVKAKHDHEAGVSKSKEKGARCYKCHEFGH 363


>gb|ABD96963.1| hypothetical protein [Cleome spinosa]
          Length = 408

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 7/109 (6%)
 Frame = -1

Query: 402 SELYNIGVNLEEEDKARLLLKSVPPSCEHLITTLLYEKGTLELVEVTTHWCSTISRNEK* 223
           S+L+++ V +EEE +A  LL S+PP+ E L   L Y + T+ + EV     + +   E  
Sbjct: 169 SDLHSLNVKVEEEYQAVYLLNSLPPAYEQLREVLKYSRATISVEEVKA--AARMKELELL 226

Query: 222 GQGG*LSCTRFIG----VREPYNRSNKGKSR---KIECWKCGKAGHTLK 97
            QG   + TR  G    V+    +S  GK +   ++ECW CGK GH  K
Sbjct: 227 AQG---TLTRGTGEGLVVKGKPEKSGGGKKKAKDQVECWYCGKKGHYKK 272


>emb|CAN66743.1| hypothetical protein VITISV_043469 [Vitis vinifera]
          Length = 798

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 41/113 (36%), Positives = 61/113 (53%), Gaps = 14/113 (12%)
 Frame = -1

Query: 402 SELYNIGVNLEEEDKARLLLKSVPPSC--EHLITTLLYEKGTLELVEVTTHWCSTISR-- 235
           S+L  I V  E++DKA + L S+P S   E+L+TTL++ K TL+L E+T+       R  
Sbjct: 43  SDLKQIDVKFEDKDKALMXLNSLPVSSTYENLVTTLMWGKETLDLEEITSALLGLNQRKK 102

Query: 234 -NEK*GQGG*LSCTRFIGVR------EPYNRSNKGKSRKI---ECWKCGKAGH 106
            N++  QG  L   R           E  N  ++ +S+KI   +C+KCGK GH
Sbjct: 103 ANDESSQGEGLMAKRNQERERNKFRSELSNNKSRFESKKIKDIQCYKCGKKGH 155