BLASTX nr result

ID: Coptis21_contig00039898 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00039898
         (326 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN74303.1| hypothetical protein VITISV_032980 [Vitis vinifera]    79   4e-13
emb|CAN71445.1| hypothetical protein VITISV_042489 [Vitis vinifera]    78   9e-13
emb|CAN76440.1| hypothetical protein VITISV_001760 [Vitis vinifera]    76   2e-12
emb|CAA69271.1| lectin receptor kinase [Arabidopsis thaliana]          74   2e-11
emb|CAB75469.1| copia-type reverse transcriptase-like protein [A...    74   2e-11

>emb|CAN74303.1| hypothetical protein VITISV_032980 [Vitis vinifera]
          Length = 1283

 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 34/94 (36%), Positives = 56/94 (59%)
 Frame = +1

Query: 43  ADVQCYNCNRYGHTKAYCKENMEDEGKIESGFMHENASSREGDDMVFVARKPSGDVRADI 222
           ++V+CY C+RYGH K  C+ NM  +G+  + F     + +E +  + +A   +     ++
Sbjct: 238 SNVECYRCHRYGHYKXECRTNMNKQGEERTNF-----AEKEEEVSLLMACHANQXTHPNL 292

Query: 223 WYLDSGCSNHMTGNKDVFVNLDNTVQSEVRIGDD 324
           WY+D+GCSNHM G+K  F +LD T +  V  GD+
Sbjct: 293 WYIDTGCSNHMCGDKSAFSDLDETFRXSVTFGDN 326


>emb|CAN71445.1| hypothetical protein VITISV_042489 [Vitis vinifera]
          Length = 1246

 Score = 77.8 bits (190), Expect = 9e-13
 Identities = 33/94 (35%), Positives = 57/94 (60%)
 Frame = +1

Query: 43  ADVQCYNCNRYGHTKAYCKENMEDEGKIESGFMHENASSREGDDMVFVARKPSGDVRADI 222
           ++V+CY C+RYGH K+ C+ NM  +G+  + F     + +E +  + +A   +     ++
Sbjct: 238 SNVECYRCHRYGHYKSECRTNMNKQGEERTNF-----AEKEEEVSLLMACHANQGTHXNL 292

Query: 223 WYLDSGCSNHMTGNKDVFVNLDNTVQSEVRIGDD 324
           WY+D+ CSNHM G+K  F +LD T ++ V  GD+
Sbjct: 293 WYIDTXCSNHMCGDKSAFSDLDETFRNSVTFGDN 326


>emb|CAN76440.1| hypothetical protein VITISV_001760 [Vitis vinifera]
          Length = 222

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 33/94 (35%), Positives = 57/94 (60%)
 Frame = +1

Query: 43  ADVQCYNCNRYGHTKAYCKENMEDEGKIESGFMHENASSREGDDMVFVARKPSGDVRADI 222
           ++V+CY C+RYGH K+ C+ NM  +G+  + F     + +E +  + +A   +     ++
Sbjct: 123 SNVECYRCHRYGHYKSECRTNMNKQGEERTNF-----AEKEEEVSLLMACHANQGTHPNL 177

Query: 223 WYLDSGCSNHMTGNKDVFVNLDNTVQSEVRIGDD 324
           WY+D+GCSNHM  +K  F +LD T ++ V  GD+
Sbjct: 178 WYIDTGCSNHMCRDKSAFSDLDETFRNFVTFGDN 211


>emb|CAA69271.1| lectin receptor kinase [Arabidopsis thaliana]
          Length = 544

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 34/97 (35%), Positives = 53/97 (54%)
 Frame = +1

Query: 34  YSLADVQCYNCNRYGHTKAYCKENMEDEGKIESGFMHENASSREGDDMVFVARKPSGDVR 213
           Y  + V+CYNC ++GH  + CK     + K ++ ++ E    +E D ++  + K      
Sbjct: 290 YDKSSVKCYNCGKFGHYASECKAPSNKKFKEKANYVEEKI--QEEDMLLMASYKKDEQEE 347

Query: 214 ADIWYLDSGCSNHMTGNKDVFVNLDNTVQSEVRIGDD 324
              WYLDSG SNHM G K +F  LD +V+  V +GD+
Sbjct: 348 NHKWYLDSGASNHMCGRKSMFAELDESVRGNVALGDE 384


>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis
           thaliana]
          Length = 1272

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 34/97 (35%), Positives = 53/97 (54%)
 Frame = +1

Query: 34  YSLADVQCYNCNRYGHTKAYCKENMEDEGKIESGFMHENASSREGDDMVFVARKPSGDVR 213
           Y  + V+CYNC ++GH  + CK     + K ++ ++ E    +E D ++  + K      
Sbjct: 274 YDKSSVKCYNCGKFGHYASECKAPSNKKFKEKANYVEEKI--QEEDMLLMASYKKDEQEE 331

Query: 214 ADIWYLDSGCSNHMTGNKDVFVNLDNTVQSEVRIGDD 324
              WYLDSG SNHM G K +F  LD +V+  V +GD+
Sbjct: 332 NHKWYLDSGASNHMCGRKSMFAELDESVRGNVALGDE 368


Top