BLASTX nr result
ID: Coptis21_contig00039895
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00039895
(272 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containi... 128 4e-28
ref|XP_002530468.1| pentatricopeptide repeat-containing protein,... 128 5e-28
ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containi... 125 3e-27
emb|CBI40215.3| unnamed protein product [Vitis vinifera] 121 5e-26
ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group] g... 110 1e-22
>ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Vitis vinifera]
Length = 1058
Score = 128 bits (322), Expect = 4e-28
Identities = 62/90 (68%), Positives = 74/90 (82%)
Frame = -3
Query: 270 QSEEALKMLSELHKSGMVPSDSMFTSALFACANIGALGMGRQLHSLTVKAGCQCNSYVGN 91
+S EAL++L ELH+SG VPSDS FTSAL ACANIG + +GR +HSL +K GCQ NSYV N
Sbjct: 535 ESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMN 594
Query: 90 GLISMYAKCRNLENVSQVFNTMRVRDTVSW 1
GLISMYAKC N+E+ S VF T+RV+DTVSW
Sbjct: 595 GLISMYAKCGNVEDGSHVFRTIRVKDTVSW 624
Score = 63.2 bits (152), Expect = 2e-08
Identities = 34/88 (38%), Positives = 48/88 (54%)
Frame = -3
Query: 264 EEALKMLSELHKSGMVPSDSMFTSALFACANIGALGMGRQLHSLTVKAGCQCNSYVGNGL 85
E AL + ++ G+ P+ TS L AC N+GA+ +G Q H+L K G +VGN L
Sbjct: 669 EVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSL 728
Query: 84 ISMYAKCRNLENVSQVFNTMRVRDTVSW 1
I+MY KC E+ VF M D ++W
Sbjct: 729 ITMYFKC-GYEDGFCVFEEMPEHDLITW 755
>ref|XP_002530468.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223530013|gb|EEF31938.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 801
Score = 128 bits (321), Expect = 5e-28
Identities = 57/88 (64%), Positives = 75/88 (85%)
Frame = -3
Query: 264 EEALKMLSELHKSGMVPSDSMFTSALFACANIGALGMGRQLHSLTVKAGCQCNSYVGNGL 85
+E LK+ +ELH++GM+P+ S FTSALFACANIG + +G+Q+HSL++K CQ N +VGNGL
Sbjct: 394 KEGLKLFTELHRTGMIPTHSCFTSALFACANIGDVEIGKQIHSLSIKMRCQSNPFVGNGL 453
Query: 84 ISMYAKCRNLENVSQVFNTMRVRDTVSW 1
ISMYAKC ++E+VS VFN+M VRDTVSW
Sbjct: 454 ISMYAKCNSVEDVSHVFNSMNVRDTVSW 481
Score = 68.2 bits (165), Expect = 7e-10
Identities = 36/90 (40%), Positives = 52/90 (57%)
Frame = -3
Query: 270 QSEEALKMLSELHKSGMVPSDSMFTSALFACANIGALGMGRQLHSLTVKAGCQCNSYVGN 91
Q E A ++ ++ +G+ P+D TS L AC N+G +G Q H+L +K G +V N
Sbjct: 524 QGEIAWQLFLDMLSAGLKPNDLTITSLLSACGNLGVTKLGEQFHALVLKHGFNSCLHVCN 583
Query: 90 GLISMYAKCRNLENVSQVFNTMRVRDTVSW 1
LISMY KC N++ + VF M RD V+W
Sbjct: 584 ALISMYFKCGNVDGL-YVFEEMIDRDIVTW 612
>ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 921
Score = 125 bits (315), Expect = 3e-27
Identities = 61/90 (67%), Positives = 72/90 (80%)
Frame = -3
Query: 270 QSEEALKMLSELHKSGMVPSDSMFTSALFACANIGALGMGRQLHSLTVKAGCQCNSYVGN 91
+SEEAL +L LH++GM+PS S TS+ AC++IGAL GRQ+HSL VKAGCQ NSYV N
Sbjct: 398 RSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVCN 457
Query: 90 GLISMYAKCRNLENVSQVFNTMRVRDTVSW 1
LISMY KCRN+E V QVFN MRV+DTVSW
Sbjct: 458 ALISMYGKCRNMEYVRQVFNRMRVKDTVSW 487
>emb|CBI40215.3| unnamed protein product [Vitis vinifera]
Length = 653
Score = 121 bits (304), Expect = 5e-26
Identities = 61/92 (66%), Positives = 73/92 (79%), Gaps = 2/92 (2%)
Frame = -3
Query: 270 QSEEALKMLSELHKSGMVPSDSMFTSALFACANIGALGMGRQLHSLTVKAGCQCNSYVGN 91
+S EAL++L ELH+SG VPSDS FTSAL ACANIG + +GR +HSL +K GCQ NSYV N
Sbjct: 273 ESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMN 332
Query: 90 GLISMYAKCRNLENVSQVFNTMRV--RDTVSW 1
GLISMYAKC N+E+ S VF T+R+ RD VSW
Sbjct: 333 GLISMYAKCGNVEDGSHVFRTIRMPKRDVVSW 364
Score = 63.2 bits (152), Expect = 2e-08
Identities = 34/88 (38%), Positives = 48/88 (54%)
Frame = -3
Query: 264 EEALKMLSELHKSGMVPSDSMFTSALFACANIGALGMGRQLHSLTVKAGCQCNSYVGNGL 85
E AL + ++ G+ P+ TS L AC N+GA+ +G Q H+L K G +VGN L
Sbjct: 378 EVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSL 437
Query: 84 ISMYAKCRNLENVSQVFNTMRVRDTVSW 1
I+MY KC E+ VF M D ++W
Sbjct: 438 ITMYFKC-GYEDGFCVFEEMPEHDLITW 464
>ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
gi|51535971|dbj|BAD38052.1| putative pentatricopeptide
(PPR) repeat-containing protein [Oryza sativa Japonica
Group] gi|218190072|gb|EEC72499.1| hypothetical protein
OsI_05871 [Oryza sativa Indica Group]
gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa
Japonica Group]
Length = 922
Score = 110 bits (275), Expect = 1e-22
Identities = 54/90 (60%), Positives = 65/90 (72%)
Frame = -3
Query: 270 QSEEALKMLSELHKSGMVPSDSMFTSALFACANIGALGMGRQLHSLTVKAGCQCNSYVGN 91
+SEEAL +L ELH+SGM+PS S TS FAC+NI AL G Q+HSL VK GCQ NS+ N
Sbjct: 399 RSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACN 458
Query: 90 GLISMYAKCRNLENVSQVFNTMRVRDTVSW 1
LI+MY KCRN+E QVF+ M +D VSW
Sbjct: 459 ALITMYGKCRNMEYARQVFSRMVTKDIVSW 488
Score = 57.4 bits (137), Expect = 1e-06
Identities = 29/90 (32%), Positives = 47/90 (52%)
Frame = -3
Query: 270 QSEEALKMLSELHKSGMVPSDSMFTSALFACANIGALGMGRQLHSLTVKAGCQCNSYVGN 91
QS EA+ + +P+ + T L C ++GA +G+Q+H++ +K G V N
Sbjct: 531 QSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVAN 590
Query: 90 GLISMYAKCRNLENVSQVFNTMRVRDTVSW 1
LISMY KC + ++F+ M RD +W
Sbjct: 591 ALISMYFKC-GCADSRRIFDLMEERDIFTW 619