BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00039860
         (237 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002330082.1| predicted protein [Populus trichocarpa] gi|2...    79   5e-13
ref|XP_002512521.1| pentatricopeptide repeat-containing protein,...    77   1e-12
ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containi...    73   3e-11
ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containi...    72   5e-11
emb|CBI39605.3| unnamed protein product [Vitis vinifera]               61   1e-07

>ref|XP_002330082.1| predicted protein [Populus trichocarpa] gi|222871507|gb|EEF08638.1|
           predicted protein [Populus trichocarpa]
          Length = 665

 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 36/68 (52%), Positives = 55/68 (80%), Gaps = 1/68 (1%)
 Frame = +2

Query: 32  TRLSQQTLSNLLDTKGTKSLQHLKQIHTLIIRYGLFQDNYIAGSLVKCY-SIHFNSLDTA 208
           ++LSQ+T+ +LL+TK + SL HLKQ+H + +R G FQD+Y++G+LVKCY + HF++L+ A
Sbjct: 24  SQLSQKTILDLLNTKSSTSLHHLKQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFA 83

Query: 209 LKAFNHVP 232
           LK F +VP
Sbjct: 84  LKVFEYVP 91


>ref|XP_002512521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548482|gb|EEF49973.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 422

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 38/85 (44%), Positives = 60/85 (70%), Gaps = 7/85 (8%)
 Frame = +2

Query: 2   THTPSYHLK------ATRLSQQTLSNLLDTKGTKSLQHLKQIHTLIIRYGLFQDNYIAGS 163
           TH P YHL        ++L+Q+T+ +LL++K   S Q+LKQIH +I+R G F+D+Y++G+
Sbjct: 8   THLP-YHLSPAENKPTSKLTQKTILDLLNSKCNASFQYLKQIHAVILRSGHFEDHYVSGT 66

Query: 164 LVKCY-SIHFNSLDTALKAFNHVPR 235
           L+KCY + HF ++D A   F+HVP+
Sbjct: 67  LLKCYANPHFKNIDLAFTVFDHVPK 91


>ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 32/72 (44%), Positives = 53/72 (73%), Gaps = 1/72 (1%)
 Frame = +2

Query: 20  HLKATRLSQQTLSNLLDTKGTKSLQHLKQIHTLIIRYGLFQDNYIAGSLVKCY-SIHFNS 196
           ++  ++L Q+T+  L D+K   SLQ+L Q+H L++R G FQD+Y++G+L+KCY + HF++
Sbjct: 23  NIPTSKLPQKTVLKLFDSKSITSLQYLTQLHALVLRSGHFQDHYVSGALLKCYANPHFSN 82

Query: 197 LDTALKAFNHVP 232
            D ALK F+ +P
Sbjct: 83  FDFALKVFSSIP 94


>ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 32/72 (44%), Positives = 53/72 (73%), Gaps = 1/72 (1%)
 Frame = +2

Query: 20  HLKATRLSQQTLSNLLDTKGTKSLQHLKQIHTLIIRYGLFQDNYIAGSLVKCY-SIHFNS 196
           ++  ++L Q+T+  L D+K   SLQ+L Q+H L++R G FQD+Y++G+L+KCY + HF++
Sbjct: 23  NIPTSKLPQKTVLKLFDSKSITSLQYLTQLHGLVLRSGHFQDHYVSGALLKCYANPHFSN 82

Query: 197 LDTALKAFNHVP 232
            D ALK F+ +P
Sbjct: 83  FDFALKVFSSIP 94


>emb|CBI39605.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 32/72 (44%), Positives = 49/72 (68%), Gaps = 4/72 (5%)
 Frame = +2

Query: 26  KATRLSQQTLSNLLDTKGTKSLQHLKQIHTLIIRYGLFQDNYIAGSLVKCY----SIHFN 193
           + ++LS + + +LL+T+ T SL HLKQ H LI+R G  QD+YIAGSLVK Y    +  + 
Sbjct: 47  ETSKLSHKAILHLLNTQCTTSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYL 106

Query: 194 SLDTALKAFNHV 229
           S +++L+ F+ V
Sbjct: 107 SFESSLRVFDFV 118