BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00039856
         (231 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containi...    66   3e-09
ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containi...    60   2e-07
ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containi...    60   2e-07
ref|XP_002515260.1| pentatricopeptide repeat-containing protein,...    58   7e-07
ref|XP_002301519.1| predicted protein [Populus trichocarpa] gi|2...    55   6e-06

>ref|XP_002271180.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic [Vitis vinifera]
          Length = 867

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 34/61 (55%), Positives = 43/61 (70%)
 Frame = +1

Query: 31  FDLMRMSSLKPSLVTYNATIDAFGKGGMDFSLSVEIIFDEMLANGVRSSACNFLNNLHIS 210
           F+ M+ S LKP+LVTYNA IDA GKGG+DF+ + E IFDEML NGV+     F + L + 
Sbjct: 243 FETMKSSGLKPNLVTYNAVIDACGKGGVDFNRAAE-IFDEMLRNGVQPDRITFNSLLAVC 301

Query: 211 G 213
           G
Sbjct: 302 G 302


>ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 30/47 (63%), Positives = 38/47 (80%)
 Frame = +1

Query: 31  FDLMRMSSLKPSLVTYNATIDAFGKGGMDFSLSVEIIFDEMLANGVR 171
           F+ M++S LKP+LVTYNA IDA GKGG++F   VE IF+EML NGV+
Sbjct: 245 FESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVE-IFEEMLRNGVQ 290


>ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
           chloroplastic-like [Cucumis sativus]
          Length = 868

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 30/47 (63%), Positives = 38/47 (80%)
 Frame = +1

Query: 31  FDLMRMSSLKPSLVTYNATIDAFGKGGMDFSLSVEIIFDEMLANGVR 171
           F+ M++S LKP+LVTYNA IDA GKGG++F   VE IF+EML NGV+
Sbjct: 245 FESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVE-IFEEMLRNGVQ 290


>ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545740|gb|EEF47244.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 878

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 30/53 (56%), Positives = 37/53 (69%)
 Frame = +1

Query: 31  FDLMRMSSLKPSLVTYNATIDAFGKGGMDFSLSVEIIFDEMLANGVRSSACNF 189
           FD M+ + L P+LVTYNA IDA GKGG++F   VE IFD ML+NGV+     F
Sbjct: 248 FDSMKSNGLMPNLVTYNAVIDACGKGGVEFKKVVE-IFDGMLSNGVQPDRITF 299


>ref|XP_002301519.1| predicted protein [Populus trichocarpa] gi|222843245|gb|EEE80792.1|
           predicted protein [Populus trichocarpa]
          Length = 718

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 29/55 (52%), Positives = 37/55 (67%)
 Frame = +1

Query: 25  QFFDLMRMSSLKPSLVTYNATIDAFGKGGMDFSLSVEIIFDEMLANGVRSSACNF 189
           + F  M+   LKP+LVTYNA IDA GKGG++F   +E IFDEML NG++     F
Sbjct: 133 KIFYSMKDYGLKPNLVTYNAVIDACGKGGVEFKRVLE-IFDEMLRNGMQPDRITF 186