BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00039828
         (300 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273893.1| PREDICTED: pentatricopeptide repeat-containi...   139   2e-31
ref|XP_004137952.1| PREDICTED: pentatricopeptide repeat-containi...   126   2e-27
ref|XP_004168141.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   124   1e-26
ref|XP_002308496.1| predicted protein [Populus trichocarpa] gi|2...   123   2e-26
ref|XP_002525211.1| pentatricopeptide repeat-containing protein,...   122   4e-26

>ref|XP_002273893.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Vitis vinifera]
          Length = 667

 Score =  139 bits (351), Expect = 2e-31
 Identities = 64/98 (65%), Positives = 79/98 (80%)
 Frame = -1

Query: 294 LKPDNFSITCLLKALSSLFPEESSGKAVHGFVLRHGYECDVYVVNALVTFYAKCGQLGFA 115
           LKPDNF+ITC+LKALS LFP+    K V  FVLRHG++ D++VVNAL+T+Y++C + G A
Sbjct: 134 LKPDNFTITCVLKALSVLFPDSILAKEVQCFVLRHGFDSDIFVVNALITYYSRCDEYGIA 193

Query: 114 RKLFDVVQERDIVSWNSMIAGYSQGGLFEVCLNLYRKM 1
           R LFD + +RDIVSWNSMIAGYSQGG +E C  LYRKM
Sbjct: 194 RILFDRMHDRDIVSWNSMIAGYSQGGFYEDCKELYRKM 231



 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 32/98 (32%), Positives = 59/98 (60%)
 Frame = -1

Query: 294 LKPDNFSITCLLKALSSLFPEESSGKAVHGFVLRHGYECDVYVVNALVTFYAKCGQLGFA 115
           L+P+  ++  +L+A +    +   G  VH F++    E DV   N+L+  YAKCG L +A
Sbjct: 237 LRPNGVTVVSVLQACAQT-NDLVFGMKVHQFIIERKVEMDVSAHNSLIGLYAKCGSLDYA 295

Query: 114 RKLFDVVQERDIVSWNSMIAGYSQGGLFEVCLNLYRKM 1
           R+LF+ +  +D V++ S+++GY   G  +  ++L+R+M
Sbjct: 296 RELFNEMSNKDEVTYGSIVSGYMTHGFVDKAMDLFREM 333



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 30/97 (30%), Positives = 55/97 (56%)
 Frame = -1

Query: 291 KPDNFSITCLLKALSSLFPEESSGKAVHGFVLRHGYECDVYVVNALVTFYAKCGQLGFAR 112
           +P+  +++ +L   S  F     GKA+H + +R+GY  ++YV  +++  YAK G L  A+
Sbjct: 370 RPNAVTLSSILPTFSC-FSNLKGGKAIHAYAIRNGYAHNIYVATSIIDAYAKLGFLRGAQ 428

Query: 111 KLFDVVQERDIVSWNSMIAGYSQGGLFEVCLNLYRKM 1
            +FD  ++R ++ W ++I+ YS  G     L L+  M
Sbjct: 429 WVFDQSKDRSLIVWTAIISAYSAHGDANAALRLFGDM 465


>ref|XP_004137952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Cucumis sativus]
          Length = 595

 Score =  126 bits (316), Expect = 2e-27
 Identities = 57/98 (58%), Positives = 74/98 (75%)
 Frame = -1

Query: 294 LKPDNFSITCLLKALSSLFPEESSGKAVHGFVLRHGYECDVYVVNALVTFYAKCGQLGFA 115
           +KPD F++TC LKAL+SLF      K VH F+LR G E D++VVNAL+TFY++C +L  A
Sbjct: 103 VKPDRFTVTCALKALASLFSNSGLAKEVHSFILRRGLEYDIFVVNALITFYSRCDELVLA 162

Query: 114 RKLFDVVQERDIVSWNSMIAGYSQGGLFEVCLNLYRKM 1
           R +FD + ERDIVSWN+M+AGYSQGG +E C  L+R M
Sbjct: 163 RIMFDRMPERDIVSWNAMLAGYSQGGSYEKCKELFRVM 200



 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 33/100 (33%), Positives = 60/100 (60%)
 Frame = -1

Query: 300 HCLKPDNFSITCLLKALSSLFPEESSGKAVHGFVLRHGYECDVYVVNALVTFYAKCGQLG 121
           H  +P+  ++  +L   S  F     GK +HG+ +R+ Y+ ++YV  A++  YAKCG L 
Sbjct: 336 HGCRPNTVTLASILPVFSH-FSTLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLH 394

Query: 120 FARKLFDVVQERDIVSWNSMIAGYSQGGLFEVCLNLYRKM 1
            A+ +FD ++ R +++W S+I+ Y+  G   V L+L+ +M
Sbjct: 395 GAQLVFDQIKGRSLIAWTSIISAYAVHGDANVALSLFYEM 434



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 29/73 (39%), Positives = 46/73 (63%)
 Frame = -1

Query: 222 GKAVHGFVLRHGYECDVYVVNALVTFYAKCGQLGFARKLFDVVQERDIVSWNSMIAGYSQ 43
           G  VH FV     + DV + NA++  YAKCG L +AR+LF+ + E+D +++ SMI+GY  
Sbjct: 229 GIEVHRFVNESQIKMDVSLWNAVIGLYAKCGSLDYARELFEEMLEKDAITYCSMISGYMV 288

Query: 42  GGLFEVCLNLYRK 4
            G     ++L+R+
Sbjct: 289 HGFVNQAMDLFRE 301


>ref|XP_004168141.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g37310-like [Cucumis sativus]
          Length = 635

 Score =  124 bits (310), Expect = 1e-26
 Identities = 56/98 (57%), Positives = 73/98 (74%)
 Frame = -1

Query: 294 LKPDNFSITCLLKALSSLFPEESSGKAVHGFVLRHGYECDVYVVNALVTFYAKCGQLGFA 115
           +KPD F++TC LKAL+SLF      K VH F+LR G E D++VVNAL+TFY++C +L  A
Sbjct: 103 VKPDRFTVTCSLKALASLFSNSGLAKEVHSFILRRGLEYDIFVVNALITFYSRCDELVLA 162

Query: 114 RKLFDVVQERDIVSWNSMIAGYSQGGLFEVCLNLYRKM 1
           R +FD + ERD VSWN+M+AGYSQGG +E C  L+R M
Sbjct: 163 RIMFDRMPERDTVSWNAMLAGYSQGGSYEECKELFRVM 200



 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 33/100 (33%), Positives = 60/100 (60%)
 Frame = -1

Query: 300 HCLKPDNFSITCLLKALSSLFPEESSGKAVHGFVLRHGYECDVYVVNALVTFYAKCGQLG 121
           H  +P+  ++  +L   S  F     GK +HG+ +R+ Y+ ++YV  A++  YAKCG L 
Sbjct: 336 HGCRPNTVTLASILPVFSH-FSTLKGGKEIHGYAIRNTYDRNIYVATAIIDSYAKCGYLH 394

Query: 120 FARKLFDVVQERDIVSWNSMIAGYSQGGLFEVCLNLYRKM 1
            A+ +FD ++ R +++W S+I+ Y+  G   V L+L+ +M
Sbjct: 395 GAQLVFDQIKGRSLIAWTSIISAYAVHGDANVALSLFYEM 434



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 33/97 (34%), Positives = 58/97 (59%)
 Frame = -1

Query: 294 LKPDNFSITCLLKALSSLFPEESSGKAVHGFVLRHGYECDVYVVNALVTFYAKCGQLGFA 115
           +KP+  +   +L+A +    + + G  VH FV     + DV + NA++  YAKCG L +A
Sbjct: 206 VKPNALTAVSVLQACAQS-NDLTFGIEVHRFVNESQIKMDVSLWNAVIGLYAKCGILDYA 264

Query: 114 RKLFDVVQERDIVSWNSMIAGYSQGGLFEVCLNLYRK 4
           R+LF+ + E+D +++ SMI+GY   G     ++L+R+
Sbjct: 265 RELFEEMPEKDGITYCSMISGYMVHGFVNQAMDLFRE 301


>ref|XP_002308496.1| predicted protein [Populus trichocarpa] gi|222854472|gb|EEE92019.1|
           predicted protein [Populus trichocarpa]
          Length = 621

 Score =  123 bits (308), Expect = 2e-26
 Identities = 60/100 (60%), Positives = 78/100 (78%), Gaps = 2/100 (2%)
 Frame = -1

Query: 294 LKPDNFSITCLLKALSSLF--PEESSGKAVHGFVLRHGYECDVYVVNALVTFYAKCGQLG 121
           L+P+N+SITCLLK+LSSL    +   GK +H FVLR G   DV+V NAL++FY+KC  +G
Sbjct: 117 LQPNNYSITCLLKSLSSLLMVTDVCLGKEIHCFVLRRGLVEDVFVENALISFYSKCLGVG 176

Query: 120 FARKLFDVVQERDIVSWNSMIAGYSQGGLFEVCLNLYRKM 1
           FARKLFD ++ERD+V+WNSMIAGY+Q G F+ C  LYR+M
Sbjct: 177 FARKLFDKMRERDVVTWNSMIAGYAQAGFFKECKELYREM 216



 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 31/74 (41%), Positives = 50/74 (67%)
 Frame = -1

Query: 222 GKAVHGFVLRHGYECDVYVVNALVTFYAKCGQLGFARKLFDVVQERDIVSWNSMIAGYSQ 43
           G  VH +++ +  E DV V NAL+  YAKCG L +AR+LFD + E+D V++ ++I+GY  
Sbjct: 245 GMEVHRYIVDNKVELDVLVCNALIGLYAKCGSLDYARELFDEMSEKDEVTYGAIISGYMA 304

Query: 42  GGLFEVCLNLYRKM 1
            G+ +  + L+R+M
Sbjct: 305 HGVVDKGMELFREM 318



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 29/97 (29%), Positives = 57/97 (58%)
 Frame = -1

Query: 291 KPDNFSITCLLKALSSLFPEESSGKAVHGFVLRHGYECDVYVVNALVTFYAKCGQLGFAR 112
           +P+  +++ +L  LS  F     GK +HG+ +++GY+ ++YV  A++  YAK G L  A+
Sbjct: 355 RPNAVTLSSVLPTLS-YFSNLKGGKEIHGYAVKNGYDRNIYVATAIIDTYAKLGFLFGAQ 413

Query: 111 KLFDVVQERDIVSWNSMIAGYSQGGLFEVCLNLYRKM 1
            +FD  +ER ++ W ++I+ ++  G     L  + +M
Sbjct: 414 YVFDQSKERSLIIWTAIISAHAAHGDANSALTFFDEM 450


>ref|XP_002525211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535508|gb|EEF37177.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 654

 Score =  122 bits (305), Expect = 4e-26
 Identities = 58/96 (60%), Positives = 75/96 (78%), Gaps = 1/96 (1%)
 Frame = -1

Query: 285 DNFSITCLLKALSSL-FPEESSGKAVHGFVLRHGYECDVYVVNALVTFYAKCGQLGFARK 109
           +N SITCLLK+LSS    +   GK VHGFVLR G++ DV+V NAL+T+Y+KC  L  +RK
Sbjct: 123 NNISITCLLKSLSSFTLSDVKLGKEVHGFVLRTGFDADVFVENALITYYSKCYDLDLSRK 182

Query: 108 LFDVVQERDIVSWNSMIAGYSQGGLFEVCLNLYRKM 1
           +FD + +RD+VSWNSMI+GYSQGGL+E C  LYR+M
Sbjct: 183 VFDRMTKRDVVSWNSMISGYSQGGLYEDCKTLYREM 218



 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 34/97 (35%), Positives = 58/97 (59%)
 Frame = -1

Query: 291 KPDNFSITCLLKALSSLFPEESSGKAVHGFVLRHGYECDVYVVNALVTFYAKCGQLGFAR 112
           +P+  ++  +L+A      + + G  VH F++ +  E D+ V NAL+  YAKCG L +AR
Sbjct: 225 RPNGVTVVSVLQACGQT-QDLAFGMEVHKFIVDNQVEIDISVCNALIGLYAKCGSLDYAR 283

Query: 111 KLFDVVQERDIVSWNSMIAGYSQGGLFEVCLNLYRKM 1
           +LFD + E+D V++ ++I+G    G  +  L L+R M
Sbjct: 284 ELFDEMSEKDEVTYGAIISGLMLHGYVDQSLELFRGM 320



 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 28/97 (28%), Positives = 57/97 (58%)
 Frame = -1

Query: 291 KPDNFSITCLLKALSSLFPEESSGKAVHGFVLRHGYECDVYVVNALVTFYAKCGQLGFAR 112
           +P+  +++ +L  ++  F     GK +H + ++ GY  ++YV  A++  YAK G L  A+
Sbjct: 357 RPNAVTLSSVLSTIA-YFSSLKGGKEIHSYAIKIGYHRNIYVATAIIDMYAKSGYLRGAQ 415

Query: 111 KLFDVVQERDIVSWNSMIAGYSQGGLFEVCLNLYRKM 1
           ++FD  ++R +V W ++I+ Y+  G   + L L+ +M
Sbjct: 416 RVFDQSKDRSLVIWTAIISAYAVHGDANLALGLFHEM 452