BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00039745
         (270 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002523876.1| pentatricopeptide repeat-containing protein,...   128   4e-28
ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containi...   127   1e-27
emb|CBI24422.3| unnamed protein product [Vitis vinifera]              127   1e-27
ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containi...   126   2e-27
gb|AEP33754.1| chloroplast biogenesis 19, partial [Nasturtium of...   125   3e-27

>ref|XP_002523876.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223536964|gb|EEF38602.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 384

 Score =  128 bits (322), Expect = 4e-28
 Identities = 58/89 (65%), Positives = 71/89 (79%)
 Frame = -1

Query: 270 KKGRFKEALECFREMQVSGVQPDYVTVVAVLAACANLGVLGFGIWVHCYAMRHGFCENIR 91
           KKG F++ALE FREMQVS V+PDYVT++AVL+ACANLG LG G+W+H Y +   F  N+R
Sbjct: 206 KKGHFEQALEWFREMQVSKVEPDYVTIIAVLSACANLGALGLGLWIHRYVLEKEFRNNVR 265

Query: 90  VRNSLIDMYSRCGCIEFARQLFRNMETRS 4
           + NSLIDMYSRCGCIE ARQ+F  M  R+
Sbjct: 266 IGNSLIDMYSRCGCIELARQVFHKMLKRT 294



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 26/90 (28%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
 Frame = -1

Query: 264 GRFKEALECFREMQVSGVQPDYVTVVAVLAACANLGVLG--FGIWVHCYAMRHGFCE-NI 94
           G+  EA   F +M+++ V+P+++T   +++ CA+    G   G  +H Y  + G    N+
Sbjct: 73  GQLPEAASLFTQMRLAAVEPNHITFATLISFCADFPFQGKSIGPSIHAYVRKLGLDTCNV 132

Query: 93  RVRNSLIDMYSRCGCIEFARQLFRNMETRS 4
            V  +L+DMY++CG ++ AR +F +++ ++
Sbjct: 133 MVGTALVDMYAKCGKVQLARLIFDDLKVKN 162


>ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Vitis vinifera]
          Length = 518

 Score =  127 bits (318), Expect = 1e-27
 Identities = 56/89 (62%), Positives = 73/89 (82%)
 Frame = -1

Query: 270 KKGRFKEALECFREMQVSGVQPDYVTVVAVLAACANLGVLGFGIWVHCYAMRHGFCENIR 91
           KKG F++ALE FREMQ++GV+PDYVT+++VLAACANLG LG G+W++ + M+  F +NI+
Sbjct: 201 KKGCFEQALEWFREMQLAGVEPDYVTIISVLAACANLGALGLGLWINRFVMKQDFKDNIK 260

Query: 90  VRNSLIDMYSRCGCIEFARQLFRNMETRS 4
           + NSLIDMYSRCGCI  ARQ+F  M  RS
Sbjct: 261 ISNSLIDMYSRCGCIRLARQVFEQMPKRS 289



 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 33/92 (35%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
 Frame = -1

Query: 270 KKGRFKEALECFREMQVSGVQPDYVTVVAVLAACANLGVLG--FGIWVHCYAMRHGF-CE 100
           + G+  EA   F  MQ++GV+P+++T + +L+AC +  + G  FG  +H Y  + G   E
Sbjct: 66  RNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGLRFGGSIHAYVRKLGLDTE 125

Query: 99  NIRVRNSLIDMYSRCGCIEFARQLFRNMETRS 4
           N+ V  +L+DMYS+CG ++ A  +F  M  R+
Sbjct: 126 NVMVGTALVDMYSKCGQLDLAWLMFDEMHVRN 157


>emb|CBI24422.3| unnamed protein product [Vitis vinifera]
          Length = 502

 Score =  127 bits (318), Expect = 1e-27
 Identities = 56/89 (62%), Positives = 73/89 (82%)
 Frame = -1

Query: 270 KKGRFKEALECFREMQVSGVQPDYVTVVAVLAACANLGVLGFGIWVHCYAMRHGFCENIR 91
           KKG F++ALE FREMQ++GV+PDYVT+++VLAACANLG LG G+W++ + M+  F +NI+
Sbjct: 201 KKGCFEQALEWFREMQLAGVEPDYVTIISVLAACANLGALGLGLWINRFVMKQDFKDNIK 260

Query: 90  VRNSLIDMYSRCGCIEFARQLFRNMETRS 4
           + NSLIDMYSRCGCI  ARQ+F  M  RS
Sbjct: 261 ISNSLIDMYSRCGCIRLARQVFEQMPKRS 289



 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 33/92 (35%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
 Frame = -1

Query: 270 KKGRFKEALECFREMQVSGVQPDYVTVVAVLAACANLGVLG--FGIWVHCYAMRHGF-CE 100
           + G+  EA   F  MQ++GV+P+++T + +L+AC +  + G  FG  +H Y  + G   E
Sbjct: 66  RNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGLRFGGSIHAYVRKLGLDTE 125

Query: 99  NIRVRNSLIDMYSRCGCIEFARQLFRNMETRS 4
           N+ V  +L+DMYS+CG ++ A  +F  M  R+
Sbjct: 126 NVMVGTALVDMYSKCGQLDLAWLMFDEMHVRN 157


>ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Glycine max]
          Length = 521

 Score =  126 bits (317), Expect = 2e-27
 Identities = 59/89 (66%), Positives = 69/89 (77%)
 Frame = -1

Query: 270 KKGRFKEALECFREMQVSGVQPDYVTVVAVLAACANLGVLGFGIWVHCYAMRHGFCENIR 91
           KK   +EALECFREMQ+SGV PDYVTV+AV+AACANLG LG G+WVH   M   F  N++
Sbjct: 204 KKDYHEEALECFREMQLSGVAPDYVTVIAVIAACANLGTLGLGLWVHRLVMTQDFRNNVK 263

Query: 90  VRNSLIDMYSRCGCIEFARQLFRNMETRS 4
           V NSLIDMYSRCGCI+ ARQ+F  M  R+
Sbjct: 264 VSNSLIDMYSRCGCIDLARQVFDRMPQRT 292



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 4/93 (4%)
 Frame = -1

Query: 270 KKGRFKEALECFREMQVSGVQPDYVTVVAVLAACANL---GVLGFGIWVHCYAMRHGFCE 100
           K G   +A   F +M+ + ++P+++T + +L+ACA+      + FG  +H +  + G   
Sbjct: 68  KSGHLVKAASKFVQMREAAIEPNHITFITLLSACAHYPSRSSISFGTAIHAHVRKLGLDI 127

Query: 99  N-IRVRNSLIDMYSRCGCIEFARQLFRNMETRS 4
           N + V  +LIDMY++CG +E AR  F  M  R+
Sbjct: 128 NDVMVGTALIDMYAKCGRVESARLAFDQMGVRN 160


>gb|AEP33754.1| chloroplast biogenesis 19, partial [Nasturtium officinale]
          Length = 447

 Score =  125 bits (315), Expect = 3e-27
 Identities = 56/89 (62%), Positives = 68/89 (76%)
 Frame = -1

Query: 270 KKGRFKEALECFREMQVSGVQPDYVTVVAVLAACANLGVLGFGIWVHCYAMRHGFCENIR 91
           KKG  +EAL  FREMQ+SGV+PDYV ++A LAAC NLG L FG+W+H Y M   F  N+R
Sbjct: 130 KKGFHEEALSWFREMQISGVKPDYVAIIAALAACTNLGALSFGLWIHRYVMSQDFKNNVR 189

Query: 90  VRNSLIDMYSRCGCIEFARQLFRNMETRS 4
           V NSLID+Y RCGC+EFARQ+F  ME R+
Sbjct: 190 VSNSLIDLYCRCGCVEFARQVFDKMEKRT 218