BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00039726
         (254 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AGA20432.1| coat protein, partial [Rose yellow vein virus] gi...    63   3e-08
gb|AFO54490.1| capsid protein [Rose yellow vein virus]                 63   3e-08

>gb|AGA20432.1| coat protein, partial [Rose yellow vein virus]
           gi|430007893|gb|AGA20433.1| coat protein, partial [Rose
           yellow vein virus]
          Length = 221

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 31/75 (41%), Positives = 46/75 (61%)
 Frame = -2

Query: 253 GPLTGAYLRLQICGTTGTKEEKYKLRQDAWLMLQKIECCKMSSIEEYSETFLRLFLIYGD 74
           G    + LRL+ICG   T EEK KL++ A  +LQ +  C +S +++Y+  F +L+ I G+
Sbjct: 147 GKFITSTLRLEICGIESTDEEKLKLQEKAKHLLQTLRLCDISMLDKYNVIFTKLYWIAGE 206

Query: 73  LRNEALLRLYFSKLP 29
           + N   L  YFSKLP
Sbjct: 207 VTNLETLNSYFSKLP 221


>gb|AFO54490.1| capsid protein [Rose yellow vein virus]
          Length = 498

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 31/75 (41%), Positives = 46/75 (61%)
 Frame = -2

Query: 253 GPLTGAYLRLQICGTTGTKEEKYKLRQDAWLMLQKIECCKMSSIEEYSETFLRLFLIYGD 74
           G    + LRL+ICG   T EEK KL++ A  +LQ +  C +S +++Y+  F +L+ I G+
Sbjct: 244 GKFITSTLRLEICGIESTDEEKLKLQEKAKHLLQTLRLCDISMLDKYNVIFTKLYWIAGE 303

Query: 73  LRNEALLRLYFSKLP 29
           + N   L  YFSKLP
Sbjct: 304 VTNLETLNSYFSKLP 318