BLASTX nr result
ID: Coptis21_contig00039720
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00039720
(517 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group... 71 3e-21
gb|AAL58228.1|AC084762_2 putative gag-pol polyprotein [Oryza sat... 71 5e-21
emb|CAN65122.1| hypothetical protein VITISV_018226 [Vitis vinifera] 72 6e-21
gb|ABA99612.1| retrotransposon protein, putative, unclassified [... 71 8e-21
emb|CAH66391.1| OSIGBa0134J07.9 [Oryza sativa Indica Group] 69 1e-20
>gb|AAP46257.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108711922|gb|ABF99717.1| retrotransposon protein,
putative, unclassified [Oryza sativa Japonica Group]
Length = 1335
Score = 71.2 bits (173), Expect(2) = 3e-21
Identities = 41/117 (35%), Positives = 58/117 (49%), Gaps = 39/117 (33%)
Frame = +3
Query: 3 FLETPSQAHLLVGKRIMRYIKGT------------------------------------- 71
++ +PSQ + KR++RYIKGT
Sbjct: 1161 YMSSPSQLNFTAAKRVLRYIKGTADYGIWYKPVKESKLIGYTDSDWAGCLDDMKSTSGYA 1220
Query: 72 --LSQAEVEYIAAA*SACQVVWLRRLCEELHQKQAFPTTIYCDIQSIISLTKNLVFH 236
L AE EY+AA+ + QVVWLRR+ E+L +KQ PTTIYCD +S I++++N V H
Sbjct: 1221 FSLGSAEAEYVAASKAVSQVVWLRRIMEDLGEKQYQPTTIYCDSKSAIAISENPVSH 1277
Score = 55.5 bits (132), Expect(2) = 3e-21
Identities = 24/43 (55%), Positives = 33/43 (76%)
Frame = +2
Query: 239 RSKHIEIKFHYILELVKDHEVAIEFCKSEDQVADILTKSLKAE 367
R+KHI IK+HYI E V EV +EFC++++Q+ADI TK+L E
Sbjct: 1279 RTKHIAIKYHYIREAVDRQEVKLEFCRTDEQLADIFTKALSKE 1321
>gb|AAL58228.1|AC084762_2 putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|108708461|gb|ABF96256.1| retrotransposon protein,
putative, unclassified [Oryza sativa Japonica Group]
Length = 1167
Score = 71.2 bits (173), Expect(2) = 5e-21
Identities = 41/117 (35%), Positives = 58/117 (49%), Gaps = 39/117 (33%)
Frame = +3
Query: 3 FLETPSQAHLLVGKRIMRYIKGT------------------------------------- 71
++ +PSQ + KR++RYIKGT
Sbjct: 993 YMSSPSQLNFTAAKRVLRYIKGTADYGIWYKPVKESKLIGYTDSDWAGCLDDMKSTSGYA 1052
Query: 72 --LSQAEVEYIAAA*SACQVVWLRRLCEELHQKQAFPTTIYCDIQSIISLTKNLVFH 236
L AE EY+AA+ + QVVWLRR+ E+L +KQ PTTIYCD +S I++++N V H
Sbjct: 1053 FSLGSAEAEYVAASKAVSQVVWLRRIMEDLGEKQYQPTTIYCDSKSAIAISENPVSH 1109
Score = 54.7 bits (130), Expect(2) = 5e-21
Identities = 24/43 (55%), Positives = 32/43 (74%)
Frame = +2
Query: 239 RSKHIEIKFHYILELVKDHEVAIEFCKSEDQVADILTKSLKAE 367
R+KHI IK+HYI E V EV +EFC++ +Q+ADI TK+L E
Sbjct: 1111 RTKHIAIKYHYIREAVDRQEVKLEFCRTNEQLADIFTKALSKE 1153
>emb|CAN65122.1| hypothetical protein VITISV_018226 [Vitis vinifera]
Length = 789
Score = 71.6 bits (174), Expect(2) = 6e-21
Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 30/118 (25%)
Frame = +3
Query: 3 FLETPSQAHLLVGKRIMRYIKGT------------------------------LSQAEVE 92
F+ +P++ +L K+++RY+KGT LS E+E
Sbjct: 620 FMASPTELYLQAAKKVLRYLKGTVDLEVFYRKEGNGELIAYTDSDYAGNPVVALSTTEIE 679
Query: 93 YIAAA*SACQVVWLRRLCEELHQKQAFPTTIYCDIQSIISLTKNLVFHGGASTLKSNF 266
++A A ACQ VW+RR+ E+L Q TT+ CD SII L+KNLV HG + + F
Sbjct: 680 FMATASCACQGVWMRRVLEKLGHSQGKCTTVLCDNSSIIKLSKNLVMHGRSKHIDVRF 737
Score = 53.9 bits (128), Expect(2) = 6e-21
Identities = 22/47 (46%), Positives = 35/47 (74%)
Frame = +2
Query: 239 RSKHIEIKFHYILELVKDHEVAIEFCKSEDQVADILTKSLKAEVLYK 379
RSKHI+++FH++L+L +D V ++ C + +QV +ILTK LK +V K
Sbjct: 729 RSKHIDVRFHFLLDLTRDRVVELKHCVTHEQVVNILTKPLKLDVFLK 775
>gb|ABA99612.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1198
Score = 71.2 bits (173), Expect(2) = 8e-21
Identities = 41/117 (35%), Positives = 58/117 (49%), Gaps = 39/117 (33%)
Frame = +3
Query: 3 FLETPSQAHLLVGKRIMRYIKGT------------------------------------- 71
++ +PSQ + KR++RYIKGT
Sbjct: 1024 YMSSPSQLNFTAAKRVLRYIKGTADYGIWYKPVKESKLIGYTDSDWAGCLDDMKSTSSYA 1083
Query: 72 --LSQAEVEYIAAA*SACQVVWLRRLCEELHQKQAFPTTIYCDIQSIISLTKNLVFH 236
L AE EY+AA+ + QVVWLRR+ E+L +KQ PTTIYCD +S I++++N V H
Sbjct: 1084 FSLGSAEAEYVAASKAVSQVVWLRRIMEDLGEKQYQPTTIYCDSKSAIAISENPVSH 1140
Score = 53.9 bits (128), Expect(2) = 8e-21
Identities = 23/43 (53%), Positives = 33/43 (76%)
Frame = +2
Query: 239 RSKHIEIKFHYILELVKDHEVAIEFCKSEDQVADILTKSLKAE 367
R+KHI IK+HYI E V EV ++FC++++Q+ADI TK+L E
Sbjct: 1142 RTKHIAIKYHYIREAVDRQEVKLKFCRTDEQLADIFTKALSKE 1184
>emb|CAH66391.1| OSIGBa0134J07.9 [Oryza sativa Indica Group]
Length = 1314
Score = 68.9 bits (167), Expect(2) = 1e-20
Identities = 40/117 (34%), Positives = 57/117 (48%), Gaps = 39/117 (33%)
Frame = +3
Query: 3 FLETPSQAHLLVGKRIMRYIKGT------------------------------------- 71
++ +PSQ + KR++RYIKGT
Sbjct: 1140 YMSSPSQLNFTAAKRVLRYIKGTADYGIWYKPVKESKLIGYTDSDWAGCLDDMKSTSGYA 1199
Query: 72 --LSQAEVEYIAAA*SACQVVWLRRLCEELHQKQAFPTTIYCDIQSIISLTKNLVFH 236
L AE EY+AA+ + QVVWLRR+ E+ +KQ PTTIYCD +S I++++N V H
Sbjct: 1200 FSLGSAEAEYVAASKAVSQVVWLRRIMEDQGEKQYQPTTIYCDSKSAIAISENPVSH 1256
Score = 55.5 bits (132), Expect(2) = 1e-20
Identities = 24/43 (55%), Positives = 33/43 (76%)
Frame = +2
Query: 239 RSKHIEIKFHYILELVKDHEVAIEFCKSEDQVADILTKSLKAE 367
R+KHI IK+HYI E V EV +EFC++++Q+ADI TK+L E
Sbjct: 1258 RTKHIAIKYHYIREAVDRQEVKLEFCRTDEQLADIFTKALSKE 1300