BLASTX nr result
ID: Coptis21_contig00039635
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00039635 (344 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, ch... 62 5e-08 ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, ch... 62 5e-08 ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch... 62 6e-08 emb|CAN65186.1| hypothetical protein VITISV_023905 [Vitis vinifera] 62 6e-08 ref|XP_002325119.1| predicted protein [Populus trichocarpa] gi|2... 59 4e-07 >ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis sativus] Length = 975 Score = 62.0 bits (149), Expect = 5e-08 Identities = 33/57 (57%), Positives = 38/57 (66%), Gaps = 7/57 (12%) Frame = -2 Query: 151 EDPPWIAS-FLS------YTNDKKKNQEIDKRKYNALRRRQVKIETEAWEKTAEEYR 2 +DPPWIAS FL K + EI+KRKYN LRRRQ+K ETEAWEK EEY+ Sbjct: 107 QDPPWIASLFLKGLYKCVQKEVKLEFMEIEKRKYNLLRRRQIKAETEAWEKMVEEYK 163 >ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis sativus] Length = 975 Score = 62.0 bits (149), Expect = 5e-08 Identities = 33/57 (57%), Positives = 38/57 (66%), Gaps = 7/57 (12%) Frame = -2 Query: 151 EDPPWIAS-FLS------YTNDKKKNQEIDKRKYNALRRRQVKIETEAWEKTAEEYR 2 +DPPWIAS FL K + EI+KRKYN LRRRQ+K ETEAWEK EEY+ Sbjct: 107 QDPPWIASLFLKGLYKCVQKEVKLEFMEIEKRKYNLLRRRQIKAETEAWEKMVEEYK 163 >ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis vinifera] Length = 979 Score = 61.6 bits (148), Expect = 6e-08 Identities = 46/138 (33%), Positives = 57/138 (41%), Gaps = 36/138 (26%) Frame = -2 Query: 307 FTLSPRPHPHKWLRGQPQIPKNSL-------NFKXXXXXXXXXXXXXQIPILPQ------ 167 FT +P PH H I KNSL NF +P+ P Sbjct: 34 FTSNPSPHFHT-----STISKNSLSSSSFRHNFHSPSHSSNSEAQCHALPLSPTNNSIET 88 Query: 166 -------------PIFLEEDPPWIASFLSYT----------NDKKKNQEIDKRKYNALRR 56 P +DPPWI+SFL + N K + +E ++R Y LRR Sbjct: 89 LQDSSNIQVKESIPRIFVQDPPWISSFLFHDWCERNRRTGQNVKLEFRETERRNYGLLRR 148 Query: 55 RQVKIETEAWEKTAEEYR 2 RQVK ETEAWE+ EEYR Sbjct: 149 RQVKAETEAWERMVEEYR 166 >emb|CAN65186.1| hypothetical protein VITISV_023905 [Vitis vinifera] Length = 1312 Score = 61.6 bits (148), Expect = 6e-08 Identities = 46/138 (33%), Positives = 57/138 (41%), Gaps = 36/138 (26%) Frame = -2 Query: 307 FTLSPRPHPHKWLRGQPQIPKNSL-------NFKXXXXXXXXXXXXXQIPILPQ------ 167 FT +P PH H I KNSL NF +P+ P Sbjct: 34 FTSNPSPHFHT-----STISKNSLSSSSFRHNFHSPSHSSNSEAQCHALPLSPTNNSIET 88 Query: 166 -------------PIFLEEDPPWIASFLSYT----------NDKKKNQEIDKRKYNALRR 56 P +DPPWI+SFL + N K + +E ++R Y LRR Sbjct: 89 LQDSSNIQVKESIPRIFVQDPPWISSFLFHDWCERNRRTGQNVKLEFRETERRNYGLLRR 148 Query: 55 RQVKIETEAWEKTAEEYR 2 RQVK ETEAWE+ EEYR Sbjct: 149 RQVKAETEAWERMVEEYR 166 >ref|XP_002325119.1| predicted protein [Populus trichocarpa] gi|222866553|gb|EEF03684.1| predicted protein [Populus trichocarpa] Length = 882 Score = 58.9 bits (141), Expect = 4e-07 Identities = 28/57 (49%), Positives = 40/57 (70%), Gaps = 7/57 (12%) Frame = -2 Query: 151 EDPPWIASF-------LSYTNDKKKNQEIDKRKYNALRRRQVKIETEAWEKTAEEYR 2 +DPPWI++ L+ K + ++I+KRKYN LRRRQ++ ETEAWE+ A+EYR Sbjct: 12 QDPPWISAHFWKGMYKLANKKVKVEFKDIEKRKYNLLRRRQIREETEAWERMADEYR 68