BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00039635
         (344 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, ch...    62   5e-08
ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, ch...    62   5e-08
ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...    62   6e-08
emb|CAN65186.1| hypothetical protein VITISV_023905 [Vitis vinifera]    62   6e-08
ref|XP_002325119.1| predicted protein [Populus trichocarpa] gi|2...    59   4e-07

>ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
           [Cucumis sativus]
          Length = 975

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 33/57 (57%), Positives = 38/57 (66%), Gaps = 7/57 (12%)
 Frame = -2

Query: 151 EDPPWIAS-FLS------YTNDKKKNQEIDKRKYNALRRRQVKIETEAWEKTAEEYR 2
           +DPPWIAS FL           K +  EI+KRKYN LRRRQ+K ETEAWEK  EEY+
Sbjct: 107 QDPPWIASLFLKGLYKCVQKEVKLEFMEIEKRKYNLLRRRQIKAETEAWEKMVEEYK 163


>ref|XP_004144791.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like
           [Cucumis sativus]
          Length = 975

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 33/57 (57%), Positives = 38/57 (66%), Gaps = 7/57 (12%)
 Frame = -2

Query: 151 EDPPWIAS-FLS------YTNDKKKNQEIDKRKYNALRRRQVKIETEAWEKTAEEYR 2
           +DPPWIAS FL           K +  EI+KRKYN LRRRQ+K ETEAWEK  EEY+
Sbjct: 107 QDPPWIASLFLKGLYKCVQKEVKLEFMEIEKRKYNLLRRRQIKAETEAWEKMVEEYK 163


>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
           vinifera]
          Length = 979

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 46/138 (33%), Positives = 57/138 (41%), Gaps = 36/138 (26%)
 Frame = -2

Query: 307 FTLSPRPHPHKWLRGQPQIPKNSL-------NFKXXXXXXXXXXXXXQIPILPQ------ 167
           FT +P PH H        I KNSL       NF               +P+ P       
Sbjct: 34  FTSNPSPHFHT-----STISKNSLSSSSFRHNFHSPSHSSNSEAQCHALPLSPTNNSIET 88

Query: 166 -------------PIFLEEDPPWIASFLSYT----------NDKKKNQEIDKRKYNALRR 56
                        P    +DPPWI+SFL +           N K + +E ++R Y  LRR
Sbjct: 89  LQDSSNIQVKESIPRIFVQDPPWISSFLFHDWCERNRRTGQNVKLEFRETERRNYGLLRR 148

Query: 55  RQVKIETEAWEKTAEEYR 2
           RQVK ETEAWE+  EEYR
Sbjct: 149 RQVKAETEAWERMVEEYR 166


>emb|CAN65186.1| hypothetical protein VITISV_023905 [Vitis vinifera]
          Length = 1312

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 46/138 (33%), Positives = 57/138 (41%), Gaps = 36/138 (26%)
 Frame = -2

Query: 307 FTLSPRPHPHKWLRGQPQIPKNSL-------NFKXXXXXXXXXXXXXQIPILPQ------ 167
           FT +P PH H        I KNSL       NF               +P+ P       
Sbjct: 34  FTSNPSPHFHT-----STISKNSLSSSSFRHNFHSPSHSSNSEAQCHALPLSPTNNSIET 88

Query: 166 -------------PIFLEEDPPWIASFLSYT----------NDKKKNQEIDKRKYNALRR 56
                        P    +DPPWI+SFL +           N K + +E ++R Y  LRR
Sbjct: 89  LQDSSNIQVKESIPRIFVQDPPWISSFLFHDWCERNRRTGQNVKLEFRETERRNYGLLRR 148

Query: 55  RQVKIETEAWEKTAEEYR 2
           RQVK ETEAWE+  EEYR
Sbjct: 149 RQVKAETEAWERMVEEYR 166


>ref|XP_002325119.1| predicted protein [Populus trichocarpa] gi|222866553|gb|EEF03684.1|
           predicted protein [Populus trichocarpa]
          Length = 882

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 28/57 (49%), Positives = 40/57 (70%), Gaps = 7/57 (12%)
 Frame = -2

Query: 151 EDPPWIASF-------LSYTNDKKKNQEIDKRKYNALRRRQVKIETEAWEKTAEEYR 2
           +DPPWI++        L+    K + ++I+KRKYN LRRRQ++ ETEAWE+ A+EYR
Sbjct: 12  QDPPWISAHFWKGMYKLANKKVKVEFKDIEKRKYNLLRRRQIREETEAWERMADEYR 68