BLASTX nr result

ID: Coptis21_contig00039622 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00039622
         (337 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004146126.1| PREDICTED: uncharacterized protein LOC101212...    67   1e-09
gb|AFK45117.1| unknown [Lotus japonicus]                               66   3e-09
gb|AFK38646.1| unknown [Lotus japonicus]                               65   4e-09
ref|XP_002527543.1| 60S ribosomal protein L24, mitochondrial pre...    60   1e-07
ref|NP_194874.1| Ribosomal L28 family [Arabidopsis thaliana] gi|...    60   1e-07

>ref|XP_004146126.1| PREDICTED: uncharacterized protein LOC101212331 [Cucumis sativus]
           gi|449528875|ref|XP_004171427.1| PREDICTED:
           uncharacterized LOC101212331 [Cucumis sativus]
          Length = 221

 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 32/49 (65%), Positives = 40/49 (81%)
 Frame = +1

Query: 70  INKIVEKVGEVNLAAGGK*SLDKCIPISKVVMGRAKRGLYADRHIQYGS 216
           + KI++KVGE NLA G K SL KCIP SK+VMGRA RG+YA RHI++G+
Sbjct: 9   MKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGN 57


>gb|AFK45117.1| unknown [Lotus japonicus]
          Length = 235

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 30/49 (61%), Positives = 40/49 (81%)
 Frame = +1

Query: 70  INKIVEKVGEVNLAAGGK*SLDKCIPISKVVMGRAKRGLYADRHIQYGS 216
           + K+++KVGE NL+   K SL KCIP +K+VMGRAKRGL+A RHIQ+G+
Sbjct: 9   MKKVLKKVGEKNLSPKSKESLQKCIPKTKIVMGRAKRGLFAGRHIQFGN 57


>gb|AFK38646.1| unknown [Lotus japonicus]
          Length = 235

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 30/49 (61%), Positives = 39/49 (79%)
 Frame = +1

Query: 70  INKIVEKVGEVNLAAGGK*SLDKCIPISKVVMGRAKRGLYADRHIQYGS 216
           + K+++KVGE NL    K SL KCIP +K+VMGRAKRGL+A RHIQ+G+
Sbjct: 9   MKKVLKKVGEKNLTPKAKESLQKCIPKTKIVMGRAKRGLFAGRHIQFGN 57


>ref|XP_002527543.1| 60S ribosomal protein L24, mitochondrial precursor, putative
           [Ricinus communis] gi|223533093|gb|EEF34852.1| 60S
           ribosomal protein L24, mitochondrial precursor, putative
           [Ricinus communis]
          Length = 211

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 28/49 (57%), Positives = 39/49 (79%)
 Frame = +1

Query: 70  INKIVEKVGEVNLAAGGK*SLDKCIPISKVVMGRAKRGLYADRHIQYGS 216
           +  +++KVG+ NL+   K SL KC+P SKVVMGRAKRG++A RHIQ+G+
Sbjct: 9   MKNVLKKVGDNNLSPEVKESLKKCMPDSKVVMGRAKRGIFAGRHIQFGN 57


>ref|NP_194874.1| Ribosomal L28 family [Arabidopsis thaliana]
           gi|15724234|gb|AAL06510.1|AF412057_1 AT4g31460/F3L17_30
           [Arabidopsis thaliana] gi|5262757|emb|CAB45905.1|
           putative protein [Arabidopsis thaliana]
           gi|7270049|emb|CAB79864.1| putative protein [Arabidopsis
           thaliana] gi|21593391|gb|AAM65340.1| unknown
           [Arabidopsis thaliana] gi|30102482|gb|AAP21159.1|
           At4g31460/F3L17_30 [Arabidopsis thaliana]
           gi|332660516|gb|AEE85916.1| Ribosomal L28 family
           [Arabidopsis thaliana]
          Length = 212

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 29/49 (59%), Positives = 36/49 (73%)
 Frame = +1

Query: 70  INKIVEKVGEVNLAAGGK*SLDKCIPISKVVMGRAKRGLYADRHIQYGS 216
           + K+V+KVG  N+    K  L  C+P +KVVMGRAKRGLYA RHIQYG+
Sbjct: 9   MKKLVKKVGAENITPELKEKLKACVPDTKVVMGRAKRGLYAGRHIQYGN 57


Top