BLASTX nr result

ID: Coptis21_contig00039516 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00039516
         (372 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280659.2| PREDICTED: cellulose synthase A catalytic su...   139   2e-31
ref|XP_002280696.2| PREDICTED: cellulose synthase-like protein G...   135   3e-30
emb|CAN70913.1| hypothetical protein VITISV_002996 [Vitis vinifera]   135   3e-30
ref|XP_002280640.2| PREDICTED: cellulose synthase-like protein G...   135   5e-30
emb|CBI26389.3| unnamed protein product [Vitis vinifera]              135   5e-30

>ref|XP_002280659.2| PREDICTED: cellulose synthase A catalytic subunit 4
           [UDP-forming]-like, partial [Vitis vinifera]
          Length = 550

 Score =  139 bits (350), Expect = 2e-31
 Identities = 69/128 (53%), Positives = 87/128 (67%), Gaps = 4/128 (3%)
 Frame = +1

Query: 1   MEARLPFHVSHVKQPRATINRIHTVFLIVAILALLYYRFSVIFRANGKIS----IFPWLL 168
           ME  LP H+ HV++  A INR H +    A++AL+YYR S + +    IS    I PWLL
Sbjct: 1   MEGSLPRHLCHVQKSSAIINRFHALIHSTALIALIYYRASFLLQNTDTISGHTPIIPWLL 60

Query: 169 ITVSELLLWLFWFLGQAYRWKPTTRTVFPERLPVDEKLPPIDVFIFTCDPTREPTIGVMN 348
           +   EL+L   W L QA+RW+P TR+VFPERLP D++LPPIDVFI T DP +EPT+ VMN
Sbjct: 61  VFAGELVLSFIWLLEQAFRWRPVTRSVFPERLPEDKQLPPIDVFICTVDPKKEPTLEVMN 120

Query: 349 TEISAMCL 372
           T ISAM L
Sbjct: 121 TVISAMAL 128


>ref|XP_002280696.2| PREDICTED: cellulose synthase-like protein G2-like [Vitis vinifera]
          Length = 733

 Score =  135 bits (340), Expect = 3e-30
 Identities = 70/129 (54%), Positives = 88/129 (68%), Gaps = 5/129 (3%)
 Frame = +1

Query: 1   MEARLPFHVSHVKQPRATINRIHTVFLIVAILALLYYRFSVIF-----RANGKISIFPWL 165
           M++ LP  + +V++  A INR +T+    A++AL+YYR S +F     RA+   S  PWL
Sbjct: 1   MDSSLPLQLCYVRKSTAIINRWYTLIHSTALMALVYYRASFLFQNPENRAHTPTS--PWL 58

Query: 166 LITVSELLLWLFWFLGQAYRWKPTTRTVFPERLPVDEKLPPIDVFIFTCDPTREPTIGVM 345
           L+   EL+L   W LGQAYRW+P TRT+FPERLP D+ LP IDVFI T DP REPT GVM
Sbjct: 59  LVFAGELILSFIWLLGQAYRWRPVTRTLFPERLPEDKHLPAIDVFICTADPKREPTFGVM 118

Query: 346 NTEISAMCL 372
           NT ISAM L
Sbjct: 119 NTVISAMAL 127


>emb|CAN70913.1| hypothetical protein VITISV_002996 [Vitis vinifera]
          Length = 643

 Score =  135 bits (340), Expect = 3e-30
 Identities = 67/128 (52%), Positives = 84/128 (65%), Gaps = 4/128 (3%)
 Frame = +1

Query: 1   MEARLPFHVSHVKQPRATINRIHTVFLIVAILALLYYRFSVIFRAN----GKISIFPWLL 168
           ME  LP H+ HV++  A INR H +    A++AL+YYR S + + N    G   I PWLL
Sbjct: 1   MEGSLPRHLCHVQKSSAIINRFHALIHSTALIALIYYRASFLLQNNDTRSGHTPIIPWLL 60

Query: 169 ITVSELLLWLFWFLGQAYRWKPTTRTVFPERLPVDEKLPPIDVFIFTCDPTREPTIGVMN 348
           +   EL+L   W L QA+RW+P TR VFPERLP D++LP ID FI T DP +EPT+ VMN
Sbjct: 61  VFAGELVLSFIWLLDQAFRWRPVTRAVFPERLPEDKQLPSIDXFICTVDPKKEPTLEVMN 120

Query: 349 TEISAMCL 372
           T ISAM L
Sbjct: 121 TVISAMAL 128


>ref|XP_002280640.2| PREDICTED: cellulose synthase-like protein G2-like [Vitis vinifera]
          Length = 678

 Score =  135 bits (339), Expect = 5e-30
 Identities = 67/128 (52%), Positives = 85/128 (66%), Gaps = 4/128 (3%)
 Frame = +1

Query: 1   MEARLPFHVSHVKQPRATINRIHTVFLIVAILALLYYRFSVIFRAN----GKISIFPWLL 168
           ME  LP H+ HV++  A I+R H +    A++AL+YYR S + + N    G   I PWLL
Sbjct: 1   MEGSLPRHLCHVQKSSAIIHRFHALIHSTALIALIYYRASFLLQNNDTRSGHTPIIPWLL 60

Query: 169 ITVSELLLWLFWFLGQAYRWKPTTRTVFPERLPVDEKLPPIDVFIFTCDPTREPTIGVMN 348
           +   EL+L   W L QA+RW+P TR VFPERLP D++LP IDVFI T DP +EPT+ VMN
Sbjct: 61  VFAGELVLSFIWLLEQAFRWRPVTRAVFPERLPEDKQLPSIDVFICTVDPKKEPTLEVMN 120

Query: 349 TEISAMCL 372
           T ISAM L
Sbjct: 121 TVISAMAL 128


>emb|CBI26389.3| unnamed protein product [Vitis vinifera]
          Length = 822

 Score =  135 bits (339), Expect = 5e-30
 Identities = 67/128 (52%), Positives = 85/128 (66%), Gaps = 4/128 (3%)
 Frame = +1

Query: 1   MEARLPFHVSHVKQPRATINRIHTVFLIVAILALLYYRFSVIFRAN----GKISIFPWLL 168
           ME  LP H+ HV++  A I+R H +    A++AL+YYR S + + N    G   I PWLL
Sbjct: 50  MEGSLPRHLCHVQKSSAIIHRFHALIHSTALIALIYYRASFLLQNNDTRSGHTPIIPWLL 109

Query: 169 ITVSELLLWLFWFLGQAYRWKPTTRTVFPERLPVDEKLPPIDVFIFTCDPTREPTIGVMN 348
           +   EL+L   W L QA+RW+P TR VFPERLP D++LP IDVFI T DP +EPT+ VMN
Sbjct: 110 VFAGELVLSFIWLLEQAFRWRPVTRAVFPERLPEDKQLPSIDVFICTVDPKKEPTLEVMN 169

Query: 349 TEISAMCL 372
           T ISAM L
Sbjct: 170 TVISAMAL 177


Top