BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00039514
         (555 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267829.1| PREDICTED: pentatricopeptide repeat-containi...   178   4e-43
ref|XP_002523226.1| pentatricopeptide repeat-containing protein,...   166   2e-39
ref|NP_193153.3| pentatricopeptide repeat-containing protein [Ar...   143   2e-32
gb|AAU94392.1| At4g14170 [Arabidopsis thaliana] gi|55733761|gb|A...   143   2e-32
emb|CAB10196.1| hypothetical protein [Arabidopsis thaliana] gi|7...   139   3e-31

>ref|XP_002267829.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14170-like [Vitis vinifera]
          Length = 455

 Score =  178 bits (452), Expect = 4e-43
 Identities = 92/155 (59%), Positives = 113/155 (72%)
 Frame = +3

Query: 90  YLSLLNLSPNQTXXXXXXXXXXXTSLYNNVILSSKLIIMYSKHNSLLPYSYSVFRHMPKR 269
           Y +LL+ SPN T           TSLY+NVILSSKL++MYS+   L P+S SVF HMP R
Sbjct: 14  YFALLHSSPNPTHLRHLHARLLRTSLYDNVILSSKLLLMYSQLGKLSPHSLSVFLHMPHR 73

Query: 270 NIYSWNNIIGVFSRSCYPERSVVLFLQMCGSVSKPDVYTLPLVLRACASTGMVYRGMSVH 449
           NIYSWN IIG FSRS  P +S+ LFLQM      PDV+TLPLVLRACA++G V  G+SVH
Sbjct: 74  NIYSWNIIIGEFSRSHLPHKSIDLFLQMRHFNQPPDVFTLPLVLRACAASGSVKLGVSVH 133

Query: 450 GLCVKWGFEKNLFVASALIFFYVTTGRIYEAKRVF 554
           GLCV+ G EK+LFVASAL+F YVT G++ +A+ +F
Sbjct: 134 GLCVEMGMEKSLFVASALVFMYVTFGKVLDARVLF 168


>ref|XP_002523226.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223537522|gb|EEF39147.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 488

 Score =  166 bits (420), Expect = 2e-39
 Identities = 88/157 (56%), Positives = 108/157 (68%), Gaps = 1/157 (0%)
 Frame = +3

Query: 87  HYLSLLNLSPNQTXXXXXXXXXXXTSLYNNVILSSKLIIMYSKHNSLLPYSYSVFRHMPK 266
           HY SLL+ SP+ T           TSLY+NV+LSSKL++MYS HN L P+S S F HMP 
Sbjct: 39  HYFSLLHSSPDLTHLRHLHARLLRTSLYDNVVLSSKLVLMYSHHNRLTPHSLSTFFHMPC 98

Query: 267 RNIYSWNNIIGVFSRSCYPERSVVLFLQM-CGSVSKPDVYTLPLVLRACASTGMVYRGMS 443
           +NIYSWN IIG F+RS  PE+SV LF+ M   S  +PD ++LPLVLRACA +G+   G S
Sbjct: 99  KNIYSWNIIIGEFARSNLPEKSVDLFIDMRRDSHFQPDDFSLPLVLRACAGSGLGKLGSS 158

Query: 444 VHGLCVKWGFEKNLFVASALIFFYVTTGRIYEAKRVF 554
           VHGLCVK G   +LFV SAL+F YVT G +  A+ VF
Sbjct: 159 VHGLCVKMGLAVSLFVGSALVFMYVTFGNVSNARVVF 195


>ref|NP_193153.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|223635637|sp|Q5XEY7.2|PP309_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g14170 gi|332657989|gb|AEE83389.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 477

 Score =  143 bits (361), Expect = 2e-32
 Identities = 76/154 (49%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
 Frame = +3

Query: 96  SLLNLSPNQTXXXXXXXXXXXTSLYNNVILSSKLIIMYSKHNSLLPYSYSVFRHMPKRNI 275
           SLL+ SPN             T LY+NV+LSSKL++ YSK N L P S SVF HMP RNI
Sbjct: 39  SLLHHSPNAKHLRHLHAHLLRTFLYSNVVLSSKLVLAYSKLNHLFPTSLSVFWHMPYRNI 98

Query: 276 YSWNNIIGVFSRSCYPERSVVLFLQMC-GSVSKPDVYTLPLVLRACASTGMVYRGMSVHG 452
           +SWN IIG FSRS +  +S+ LFL+M   S  +PD +TLPL+LRAC+++     G  +H 
Sbjct: 99  FSWNIIIGEFSRSGFASKSIDLFLRMWRESCVRPDDFTLPLILRACSASREAKSGDLIHV 158

Query: 453 LCVKWGFEKNLFVASALIFFYVTTGRIYEAKRVF 554
           LC+K GF  +LFV+SAL+  YV  G++  A+++F
Sbjct: 159 LCLKLGFSSSLFVSSALVIMYVDMGKLLHARKLF 192


>gb|AAU94392.1| At4g14170 [Arabidopsis thaliana] gi|55733761|gb|AAV59277.1|
           At4g14170 [Arabidopsis thaliana]
          Length = 458

 Score =  143 bits (361), Expect = 2e-32
 Identities = 76/154 (49%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
 Frame = +3

Query: 96  SLLNLSPNQTXXXXXXXXXXXTSLYNNVILSSKLIIMYSKHNSLLPYSYSVFRHMPKRNI 275
           SLL+ SPN             T LY+NV+LSSKL++ YSK N L P S SVF HMP RNI
Sbjct: 20  SLLHHSPNAKHLRHLHAHLLRTFLYSNVVLSSKLVLAYSKLNHLFPTSLSVFWHMPYRNI 79

Query: 276 YSWNNIIGVFSRSCYPERSVVLFLQMC-GSVSKPDVYTLPLVLRACASTGMVYRGMSVHG 452
           +SWN IIG FSRS +  +S+ LFL+M   S  +PD +TLPL+LRAC+++     G  +H 
Sbjct: 80  FSWNIIIGEFSRSGFASKSIDLFLRMWRESCVRPDDFTLPLILRACSASREAKSGDLIHV 139

Query: 453 LCVKWGFEKNLFVASALIFFYVTTGRIYEAKRVF 554
           LC+K GF  +LFV+SAL+  YV  G++  A+++F
Sbjct: 140 LCLKLGFSSSLFVSSALVIMYVDMGKLLHARKLF 173


>emb|CAB10196.1| hypothetical protein [Arabidopsis thaliana]
           gi|7268122|emb|CAB78459.1| hypothetical protein
           [Arabidopsis thaliana]
          Length = 428

 Score =  139 bits (350), Expect = 3e-31
 Identities = 75/150 (50%), Positives = 98/150 (65%), Gaps = 1/150 (0%)
 Frame = +3

Query: 96  SLLNLSPNQTXXXXXXXXXXXTSLYNNVILSSKLIIMYSKHNSLLPYSYSVFRHMPKRNI 275
           SLL+ SPN             T LY+NV+LSSKL++ YSK N L P S SVF HMP RNI
Sbjct: 20  SLLHHSPNAKHLRHLHAHLLRTFLYSNVVLSSKLVLAYSKLNHLFPTSLSVFWHMPYRNI 79

Query: 276 YSWNNIIGVFSRSCYPERSVVLFLQMC-GSVSKPDVYTLPLVLRACASTGMVYRGMSVHG 452
           +SWN IIG FSRS +  +S+ LFL+M   S  +PD +TLPL+LRAC+++     G  +H 
Sbjct: 80  FSWNIIIGEFSRSGFASKSIDLFLRMWRESCVRPDDFTLPLILRACSASREAKSGDLIHV 139

Query: 453 LCVKWGFEKNLFVASALIFFYVTTGRIYEA 542
           LC+K GF  +LFV+SAL+  YV  G++  A
Sbjct: 140 LCLKLGFSSSLFVSSALVIMYVDMGKLLHA 169