BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00039493
         (306 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD63142.1| Retrotransposon gag protein [Asparagus officinalis]    172   3e-41
gb|ABG37668.1| gag protein [Populus trichocarpa]                      172   3e-41
gb|ABG37657.1| integrase [Populus trichocarpa]                        172   3e-41
gb|ABG37671.1| integrase [Populus trichocarpa]                        170   1e-40
gb|ABG37670.1| integrase [Populus trichocarpa]                        166   2e-39

>gb|ABD63142.1| Retrotransposon gag protein [Asparagus officinalis]
          Length = 1788

 Score =  172 bits (436), Expect = 3e-41
 Identities = 79/102 (77%), Positives = 94/102 (92%)
 Frame = +1

Query: 1    CKTNDHKVVVNFLKYNIFSRFGTPRAIISDNGTHFTHRAFESLMKKYSITHKLATPYHPQ 180
            CKTND+KVVV FLK NIF+RFG PRAIISDNGTHF +R+FE+LM+KYSITHKL+TPYHPQ
Sbjct: 1459 CKTNDNKVVVKFLKENIFARFGVPRAIISDNGTHFCNRSFEALMRKYSITHKLSTPYHPQ 1518

Query: 181  TSGQIEVSNREIKRILEKTVRPDRKDWSQRLNDSLWAYRTAY 306
            TSGQ+EV+NR+IK+ILEKTV  +RKDWS +L D+LWAYRTA+
Sbjct: 1519 TSGQVEVTNRQIKQILEKTVNHNRKDWSVKLCDALWAYRTAF 1560


>gb|ABG37668.1| gag protein [Populus trichocarpa]
          Length = 1886

 Score =  172 bits (435), Expect = 3e-41
 Identities = 78/101 (77%), Positives = 90/101 (89%)
 Frame = +1

Query: 4    KTNDHKVVVNFLKYNIFSRFGTPRAIISDNGTHFTHRAFESLMKKYSITHKLATPYHPQT 183
            +TNDHK V+ FLK NI SRFG PRA+ISD GTHF ++ FESLMKKY ITHK+ATPYHPQT
Sbjct: 994  RTNDHKTVIKFLKENILSRFGIPRAMISDGGTHFCNKPFESLMKKYGITHKVATPYHPQT 1053

Query: 184  SGQIEVSNREIKRILEKTVRPDRKDWSQRLNDSLWAYRTAY 306
            SGQ+E++NREIK+ILEKTV P+RKDWS RLND+LWAYRTAY
Sbjct: 1054 SGQVELANREIKQILEKTVNPNRKDWSLRLNDALWAYRTAY 1094



 Score =  109 bits (273), Expect = 2e-22
 Identities = 51/75 (68%), Positives = 60/75 (80%)
 Frame = +1

Query: 4   KTNDHKVVVNFLKYNIFSRFGTPRAIISDNGTHFTHRAFESLMKKYSITHKLATPYHPQT 183
           +TNDHK V+ FLK NI SRFG PRA+ISD GTHF ++ FESLMKKY ITHK+ATPYHPQT
Sbjct: 745 RTNDHKTVIKFLKENILSRFGIPRAMISDGGTHFCNKPFESLMKKYGITHKVATPYHPQT 804

Query: 184 SGQIEVSNREIKRIL 228
           SGQ +   R ++ IL
Sbjct: 805 SGQKDSKARLVRWIL 819


>gb|ABG37657.1| integrase [Populus trichocarpa]
          Length = 1738

 Score =  172 bits (435), Expect = 3e-41
 Identities = 78/101 (77%), Positives = 90/101 (89%)
 Frame = +1

Query: 4    KTNDHKVVVNFLKYNIFSRFGTPRAIISDNGTHFTHRAFESLMKKYSITHKLATPYHPQT 183
            +TNDHK V+ FLK NI SRFG PRA+ISD GTHF ++ FESLMKKY ITHK+ATPYHPQT
Sbjct: 846  RTNDHKTVIKFLKENILSRFGIPRAMISDGGTHFCNKPFESLMKKYGITHKVATPYHPQT 905

Query: 184  SGQIEVSNREIKRILEKTVRPDRKDWSQRLNDSLWAYRTAY 306
            SGQ+E++NREIK+ILEKTV P+RKDWS RLND+LWAYRTAY
Sbjct: 906  SGQVELANREIKQILEKTVNPNRKDWSLRLNDALWAYRTAY 946



 Score =  109 bits (273), Expect = 2e-22
 Identities = 51/75 (68%), Positives = 60/75 (80%)
 Frame = +1

Query: 4   KTNDHKVVVNFLKYNIFSRFGTPRAIISDNGTHFTHRAFESLMKKYSITHKLATPYHPQT 183
           +TNDHK V+ FLK NI SRFG PRA+ISD GTHF ++ FESLMKKY ITHK+ATPYHPQT
Sbjct: 597 RTNDHKTVIKFLKENILSRFGIPRAMISDGGTHFCNKPFESLMKKYGITHKVATPYHPQT 656

Query: 184 SGQIEVSNREIKRIL 228
           SGQ +   R ++ IL
Sbjct: 657 SGQKDSKARLVRWIL 671


>gb|ABG37671.1| integrase [Populus trichocarpa]
          Length = 1332

 Score =  170 bits (430), Expect = 1e-40
 Identities = 78/101 (77%), Positives = 89/101 (88%)
 Frame = +1

Query: 4    KTNDHKVVVNFLKYNIFSRFGTPRAIISDNGTHFTHRAFESLMKKYSITHKLATPYHPQT 183
            + NDHK V+ FLK NI SRFG PRA+ISD GTHF + +FESLMKKY ITHK+ATPYHPQT
Sbjct: 933  RNNDHKTVIKFLKENILSRFGIPRAMISDGGTHFCNTSFESLMKKYGITHKVATPYHPQT 992

Query: 184  SGQIEVSNREIKRILEKTVRPDRKDWSQRLNDSLWAYRTAY 306
            SGQIE++NREIK+ILEKTV P+RKDWS RLND+LWAYRTAY
Sbjct: 993  SGQIELANREIKQILEKTVNPNRKDWSLRLNDALWAYRTAY 1033


>gb|ABG37670.1| integrase [Populus trichocarpa]
          Length = 649

 Score =  166 bits (420), Expect = 2e-39
 Identities = 75/101 (74%), Positives = 88/101 (87%)
 Frame = +1

Query: 4   KTNDHKVVVNFLKYNIFSRFGTPRAIISDNGTHFTHRAFESLMKKYSITHKLATPYHPQT 183
           +TNDHK V+ FLK NI SRFG PRA+ISD GTHF ++ FESLMKKY ITHK+ATPYHPQT
Sbjct: 245 RTNDHKTVIKFLKENILSRFGIPRAMISDGGTHFCNKPFESLMKKYGITHKVATPYHPQT 304

Query: 184 SGQIEVSNREIKRILEKTVRPDRKDWSQRLNDSLWAYRTAY 306
           SGQ+E++N+EIK+ILEKTV P+ KDWS RLND+LWAYRT Y
Sbjct: 305 SGQVELANKEIKQILEKTVNPNWKDWSLRLNDALWAYRTTY 345