BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00039412
         (336 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002532784.1| pentatricopeptide repeat-containing protein,...    75   7e-12
ref|XP_002865170.1| pentatricopeptide repeat-containing protein ...    72   6e-11
ref|NP_568665.1| pentatricopeptide repeat-containing protein [Ar...    70   2e-10
dbj|BAD95174.1| hypothetical protein [Arabidopsis thaliana]            70   2e-10
gb|AAM67288.1| unknown [Arabidopsis thaliana]                          70   2e-10

>ref|XP_002532784.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223527472|gb|EEF29603.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 487

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 36/57 (63%), Positives = 45/57 (78%)
 Frame = -1

Query: 171 MFPRLYTRLLNITIHSLCKAQQLEKAETILVDAIRLGYFPNINTYNNLISAYSRIVS 1
           M  RL TRLLNI+I SLCKA++L KAE++++D IRLG  P++ TYN LI AYSR VS
Sbjct: 31  MVRRLSTRLLNISIASLCKAKELNKAESVIIDGIRLGVLPDVVTYNTLIDAYSRFVS 87


>ref|XP_002865170.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297311005|gb|EFH41429.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 468

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 32/55 (58%), Positives = 42/55 (76%)
 Frame = -1

Query: 168 FPRLYTRLLNITIHSLCKAQQLEKAETILVDAIRLGYFPNINTYNNLISAYSRIV 4
           FP + T+LLNI++ SLCK + LEKAET+L+D IRLG  P++ TYN LI  YSR +
Sbjct: 8   FPGISTKLLNISVDSLCKFRNLEKAETLLIDGIRLGVLPDVITYNTLIKGYSRFI 62


>ref|NP_568665.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|223635755|sp|Q56XR6.2|PP421_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g46680 gi|332008030|gb|AED95413.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 468

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 30/55 (54%), Positives = 43/55 (78%)
 Frame = -1

Query: 168 FPRLYTRLLNITIHSLCKAQQLEKAETILVDAIRLGYFPNINTYNNLISAYSRIV 4
           FP + T+LLNI+++SLCK + LE+AET+L+D IRLG  P++ TYN LI  Y+R +
Sbjct: 8   FPGISTKLLNISVNSLCKFRNLERAETLLIDGIRLGVLPDVITYNTLIKGYTRFI 62


>dbj|BAD95174.1| hypothetical protein [Arabidopsis thaliana]
          Length = 468

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 30/55 (54%), Positives = 43/55 (78%)
 Frame = -1

Query: 168 FPRLYTRLLNITIHSLCKAQQLEKAETILVDAIRLGYFPNINTYNNLISAYSRIV 4
           FP + T+LLNI+++SLCK + LE+AET+L+D IRLG  P++ TYN LI  Y+R +
Sbjct: 8   FPGISTKLLNISVNSLCKFRNLERAETLLIDGIRLGVLPDVITYNTLIKGYTRFI 62


>gb|AAM67288.1| unknown [Arabidopsis thaliana]
          Length = 463

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 30/55 (54%), Positives = 43/55 (78%)
 Frame = -1

Query: 168 FPRLYTRLLNITIHSLCKAQQLEKAETILVDAIRLGYFPNINTYNNLISAYSRIV 4
           FP + T+LLNI+++SLCK + LE+AET+L+D IRLG  P++ TYN LI  Y+R +
Sbjct: 3   FPGISTKLLNISVNSLCKFRNLERAETLLIDGIRLGVLPDVITYNTLIKGYTRFI 57