BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00039327
         (264 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...    73   3e-11
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal...    71   8e-11
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]        71   1e-10
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                 71   1e-10
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...    71   1e-10

>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
           [Arabidopsis thaliana]
          Length = 1164

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 38/84 (45%), Positives = 51/84 (60%)
 Frame = -3

Query: 262 LFVLIMEALSCLLRMNVRNNTIKPHPKCKKTGVISLCFADDLLLFFNGDYHSAEAVMETL 83
           LFVL ME  S LL+    +  I  HPK  +  +  L FADD+++FF+G   S   ++E+L
Sbjct: 557 LFVLAMEVFSGLLQSRYTSGYIAYHPKTSQLEISHLMFADDVMIFFDGKSSSLHGIVESL 616

Query: 82  SNFAGCTGLLMNKQKTSLLTGGLS 11
            +FAG +GLLMN  KT L   GLS
Sbjct: 617 EDFAGWSGLLMNTNKTQLYHAGLS 640


>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 35/84 (41%), Positives = 51/84 (60%)
 Frame = -3

Query: 262 LFVLIMEALSCLLRMNVRNNTIKPHPKCKKTGVISLCFADDLLLFFNGDYHSAEAVMETL 83
           LFV+ ME LS +L           HPKCK  G+  LCFADDL++  +G   S + ++E +
Sbjct: 71  LFVISMEVLSKMLDQAAGGKRFGFHPKCKNLGLTHLCFADDLMILTDGKVRSVDGIVEVM 130

Query: 82  SNFAGCTGLLMNKQKTSLLTGGLS 11
           + FA  +GL +N +KT+L T G+S
Sbjct: 131 NLFAKRSGLQINMEKTTLYTAGVS 154


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 36/87 (41%), Positives = 50/87 (57%)
 Frame = -3

Query: 262 LFVLIMEALSCLLRMNVRNNTIKPHPKCKKTGVISLCFADDLLLFFNGDYHSAEAVMETL 83
           LFVL MEA S LL     +  I  HPK     +  L FADD+++FF+G   S   + ETL
Sbjct: 660 LFVLAMEAFSNLLHSRYESGLIHYHPKASNLSISHLMFADDVMIFFDGGSFSLHGICETL 719

Query: 82  SNFAGCTGLLMNKQKTSLLTGGLSAID 2
            +FA  +GL +NK K+ L   GL+ ++
Sbjct: 720 DDFASWSGLKVNKDKSHLYLAGLNQLE 746


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 34/87 (39%), Positives = 53/87 (60%)
 Frame = -3

Query: 262 LFVLIMEALSCLLRMNVRNNTIKPHPKCKKTGVISLCFADDLLLFFNGDYHSAEAVMETL 83
           LFV+ M  LS ++ +   +  I  HPKCKK  +  LCFADDL++F +G   S E V+   
Sbjct: 239 LFVICMNVLSHMIDVAAVHRNIGYHPKCKKLSLTHLCFADDLMVFIDGQQRSVEGVINIF 298

Query: 82  SNFAGCTGLLMNKQKTSLLTGGLSAID 2
             FAG +GL ++ +K++L   G+S ++
Sbjct: 299 KEFAGKSGLHISLEKSTLYLAGVSELN 325


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 35/87 (40%), Positives = 53/87 (60%)
 Frame = -3

Query: 262  LFVLIMEALSCLLRMNVRNNTIKPHPKCKKTGVISLCFADDLLLFFNGDYHSAEAVMETL 83
            LFV+ M  LS ++     +  I  HPKC+K G+  LCFADDL++F +G   S E V+   
Sbjct: 963  LFVICMNVLSHMIDEAAVHRNIGYHPKCEKIGLTHLCFADDLMVFVDGHQWSIEGVINVF 1022

Query: 82   SNFAGCTGLLMNKQKTSLLTGGLSAID 2
              FAG +GL ++ +K+++   G+SA D
Sbjct: 1023 KEFAGRSGLQISLEKSTIYLAGVSASD 1049