BLASTX nr result
ID: Coptis21_contig00039327
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00039327 (264 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 73 3e-11 gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal... 71 8e-11 gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 71 1e-10 gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana] 71 1e-10 gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 71 1e-10 >gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13) [Arabidopsis thaliana] Length = 1164 Score = 72.8 bits (177), Expect = 3e-11 Identities = 38/84 (45%), Positives = 51/84 (60%) Frame = -3 Query: 262 LFVLIMEALSCLLRMNVRNNTIKPHPKCKKTGVISLCFADDLLLFFNGDYHSAEAVMETL 83 LFVL ME S LL+ + I HPK + + L FADD+++FF+G S ++E+L Sbjct: 557 LFVLAMEVFSGLLQSRYTSGYIAYHPKTSQLEISHLMFADDVMIFFDGKSSSLHGIVESL 616 Query: 82 SNFAGCTGLLMNKQKTSLLTGGLS 11 +FAG +GLLMN KT L GLS Sbjct: 617 EDFAGWSGLLMNTNKTQLYHAGLS 640 >gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana] Length = 629 Score = 71.2 bits (173), Expect = 8e-11 Identities = 35/84 (41%), Positives = 51/84 (60%) Frame = -3 Query: 262 LFVLIMEALSCLLRMNVRNNTIKPHPKCKKTGVISLCFADDLLLFFNGDYHSAEAVMETL 83 LFV+ ME LS +L HPKCK G+ LCFADDL++ +G S + ++E + Sbjct: 71 LFVISMEVLSKMLDQAAGGKRFGFHPKCKNLGLTHLCFADDLMILTDGKVRSVDGIVEVM 130 Query: 82 SNFAGCTGLLMNKQKTSLLTGGLS 11 + FA +GL +N +KT+L T G+S Sbjct: 131 NLFAKRSGLQINMEKTTLYTAGVS 154 >gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] Length = 1213 Score = 70.9 bits (172), Expect = 1e-10 Identities = 36/87 (41%), Positives = 50/87 (57%) Frame = -3 Query: 262 LFVLIMEALSCLLRMNVRNNTIKPHPKCKKTGVISLCFADDLLLFFNGDYHSAEAVMETL 83 LFVL MEA S LL + I HPK + L FADD+++FF+G S + ETL Sbjct: 660 LFVLAMEAFSNLLHSRYESGLIHYHPKASNLSISHLMFADDVMIFFDGGSFSLHGICETL 719 Query: 82 SNFAGCTGLLMNKQKTSLLTGGLSAID 2 +FA +GL +NK K+ L GL+ ++ Sbjct: 720 DDFASWSGLKVNKDKSHLYLAGLNQLE 746 >gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana] Length = 740 Score = 70.9 bits (172), Expect = 1e-10 Identities = 34/87 (39%), Positives = 53/87 (60%) Frame = -3 Query: 262 LFVLIMEALSCLLRMNVRNNTIKPHPKCKKTGVISLCFADDLLLFFNGDYHSAEAVMETL 83 LFV+ M LS ++ + + I HPKCKK + LCFADDL++F +G S E V+ Sbjct: 239 LFVICMNVLSHMIDVAAVHRNIGYHPKCKKLSLTHLCFADDLMVFIDGQQRSVEGVINIF 298 Query: 82 SNFAGCTGLLMNKQKTSLLTGGLSAID 2 FAG +GL ++ +K++L G+S ++ Sbjct: 299 KEFAGKSGLHISLEKSTLYLAGVSELN 325 >gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 1529 Score = 70.9 bits (172), Expect = 1e-10 Identities = 35/87 (40%), Positives = 53/87 (60%) Frame = -3 Query: 262 LFVLIMEALSCLLRMNVRNNTIKPHPKCKKTGVISLCFADDLLLFFNGDYHSAEAVMETL 83 LFV+ M LS ++ + I HPKC+K G+ LCFADDL++F +G S E V+ Sbjct: 963 LFVICMNVLSHMIDEAAVHRNIGYHPKCEKIGLTHLCFADDLMVFVDGHQWSIEGVINVF 1022 Query: 82 SNFAGCTGLLMNKQKTSLLTGGLSAID 2 FAG +GL ++ +K+++ G+SA D Sbjct: 1023 KEFAGRSGLQISLEKSTIYLAGVSASD 1049