BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00039284
         (550 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002306785.1| predicted protein [Populus trichocarpa] gi|2...    83   3e-14
ref|XP_004146992.1| PREDICTED: pentatricopeptide repeat-containi...    79   6e-13
ref|XP_002467230.1| hypothetical protein SORBIDRAFT_01g021710 [S...    77   2e-12
ref|XP_002524751.1| pentatricopeptide repeat-containing protein,...    77   2e-12
ref|XP_003571794.1| PREDICTED: pentatricopeptide repeat-containi...    77   2e-12

>ref|XP_002306785.1| predicted protein [Populus trichocarpa] gi|222856234|gb|EEE93781.1|
           predicted protein [Populus trichocarpa]
          Length = 750

 Score = 83.2 bits (204), Expect = 3e-14
 Identities = 38/58 (65%), Positives = 51/58 (87%)
 Frame = -1

Query: 178 SFSTMAETILVQARDPSRLSVELENSIVECRFDDSWKLYQQYKEMEGFPRKSILNNLL 5
           SFST+A TILVQARDP++L +E+EN+I E RF+D+WKL++Q+  M+GFPRKSI+N LL
Sbjct: 40  SFSTLAGTILVQARDPAKLCMEIENAIDEHRFNDAWKLFEQHLHMDGFPRKSIVNKLL 97


>ref|XP_004146992.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03100,
           mitochondrial-like [Cucumis sativus]
           gi|449503826|ref|XP_004162196.1| PREDICTED:
           pentatricopeptide repeat-containing protein At1g03100,
           mitochondrial-like [Cucumis sativus]
          Length = 796

 Score = 78.6 bits (192), Expect = 6e-13
 Identities = 34/56 (60%), Positives = 49/56 (87%)
 Frame = -1

Query: 172 STMAETILVQARDPSRLSVELENSIVECRFDDSWKLYQQYKEMEGFPRKSILNNLL 5
           ST++E ILVQARDP++LS++++ +I E R +D+WKLYQQ+ +MEGFPRKS++N LL
Sbjct: 87  STLSERILVQARDPAKLSMDIQTAIEEQRLNDTWKLYQQHMQMEGFPRKSVVNKLL 142


>ref|XP_002467230.1| hypothetical protein SORBIDRAFT_01g021710 [Sorghum bicolor]
           gi|241921084|gb|EER94228.1| hypothetical protein
           SORBIDRAFT_01g021710 [Sorghum bicolor]
          Length = 768

 Score = 77.0 bits (188), Expect = 2e-12
 Identities = 35/62 (56%), Positives = 49/62 (79%)
 Frame = -1

Query: 190 SWGLSFSTMAETILVQARDPSRLSVELENSIVECRFDDSWKLYQQYKEMEGFPRKSILNN 11
           S G  FST+A TILVQA DPS+L++E+EN+I E RFDD+W+ Y ++  M+G PRKS+L+ 
Sbjct: 62  SCGACFSTVAGTILVQAHDPSQLALEIENAIDEQRFDDAWRAYDKHVHMDGLPRKSVLSK 121

Query: 10  LL 5
           L+
Sbjct: 122 LI 123


>ref|XP_002524751.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535935|gb|EEF37594.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 787

 Score = 77.0 bits (188), Expect = 2e-12
 Identities = 35/59 (59%), Positives = 49/59 (83%)
 Frame = -1

Query: 178 SFSTMAETILVQARDPSRLSVELENSIVECRFDDSWKLYQQYKEMEGFPRKSILNNLLA 2
           S ST+A TILVQARDP+RLS  +E++I E R  D+WKL++++ +MEGFP+KS++N LLA
Sbjct: 77  SLSTLAGTILVQARDPARLSAGVEHAINELRLSDAWKLFEKHMQMEGFPQKSVVNKLLA 135


>ref|XP_003571794.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03100,
           mitochondrial-like [Brachypodium distachyon]
          Length = 806

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 36/76 (47%), Positives = 57/76 (75%), Gaps = 1/76 (1%)
 Frame = -1

Query: 229 DSPLGKVNN-VCTNSWGLSFSTMAETILVQARDPSRLSVELENSIVECRFDDSWKLYQQY 53
           D  +G +N+ +   S G  FST A+T+LVQARD S+L++E+EN+I + RFDD+W+ Y+++
Sbjct: 80  DKNIGFLNHKLHIRSCGACFSTTAQTVLVQARDSSQLALEIENAIDQQRFDDAWRAYEKH 139

Query: 52  KEMEGFPRKSILNNLL 5
             M+G PRKS+L+ L+
Sbjct: 140 VHMDGLPRKSVLSKLI 155