BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00039204
         (364 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002523370.1| pentatricopeptide repeat-containing protein,...   177   6e-43
ref|XP_003548424.1| PREDICTED: pentatricopeptide repeat-containi...   171   6e-41
ref|XP_003529895.1| PREDICTED: pentatricopeptide repeat-containi...   169   3e-40
ref|XP_002320193.1| predicted protein [Populus trichocarpa] gi|2...   167   1e-39
ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containi...   165   3e-39

>ref|XP_002523370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223537458|gb|EEF39086.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 695

 Score =  177 bits (450), Expect = 6e-43
 Identities = 80/120 (66%), Positives = 103/120 (85%)
 Frame = +3

Query: 3   DLVTWNGLIFGYSLWGRSKEALLLIRQMKTLGLNPNVVSWTAIISGCSQMENYKDSLELF 182
           D+VTWNGL+ GYS+WG ++EAL +I ++K+ GL PNVVSWTA+ISGCSQ  NYK+SLE F
Sbjct: 502 DIVTWNGLVSGYSIWGHNEEALAVINEIKSSGLTPNVVSWTALISGCSQNGNYKESLEFF 561

Query: 183 LQMQEEGIEPNSTTISSLLRACAGLSLLQIGEEIHCRAVKFGYYEDIYVATSLIDMYCKS 362
           +QMQ+EGI+PNSTT+SSLL+ C GLSLL+ G+EIHC +VK G+  DIY+AT+L+DMY KS
Sbjct: 562 IQMQQEGIKPNSTTVSSLLKTCGGLSLLKKGKEIHCLSVKSGFTGDIYIATALVDMYSKS 621



 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 41/120 (34%), Positives = 72/120 (60%)
 Frame = +3

Query: 3   DLVTWNGLIFGYSLWGRSKEALLLIRQMKTLGLNPNVVSWTAIISGCSQMENYKDSLELF 182
           +L +WN +I  Y+  G    A  L  +M++  + P++++W  ++SG +   +YK+ L + 
Sbjct: 331 NLSSWNSIISSYTALGYLNGAWKLFHEMESSSVKPDIITWNCLLSGHALHGSYKEVLMIL 390

Query: 183 LQMQEEGIEPNSTTISSLLRACAGLSLLQIGEEIHCRAVKFGYYEDIYVATSLIDMYCKS 362
            +MQ  G  PNS++I+S+L+    L LL+IG+ IH   ++     D+YV  SL+DMY K+
Sbjct: 391 QKMQVTGFRPNSSSITSVLQTVTELRLLKIGKGIHGYVIRNRLNPDLYVEASLLDMYVKN 450


>ref|XP_003548424.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score =  171 bits (433), Expect = 6e-41
 Identities = 80/119 (67%), Positives = 101/119 (84%)
 Frame = +3

Query: 3   DLVTWNGLIFGYSLWGRSKEALLLIRQMKTLGLNPNVVSWTAIISGCSQMENYKDSLELF 182
           DLVTWN L+ GYS+ GRS+EAL +I ++K+LGL PNVVSWTA+ISGC Q ENY D+L+ F
Sbjct: 468 DLVTWNSLVSGYSMSGRSEEALAVINRIKSLGLTPNVVSWTAMISGCCQNENYMDALQFF 527

Query: 183 LQMQEEGIEPNSTTISSLLRACAGLSLLQIGEEIHCRAVKFGYYEDIYVATSLIDMYCK 359
            QMQEE ++PNSTTI +LLRACAG SLL+IGEEIHC +++ G+ +DIY+AT+LIDMY K
Sbjct: 528 SQMQEENVKPNSTTICTLLRACAGSSLLKIGEEIHCFSMRHGFLDDIYIATALIDMYGK 586



 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 38/117 (32%), Positives = 71/117 (60%)
 Frame = +3

Query: 12  TWNGLIFGYSLWGRSKEALLLIRQMKTLGLNPNVVSWTAIISGCSQMENYKDSLELFLQM 191
           +WN +I  Y++      A  L+++M++ G+ P++++W +++SG     +Y++ L  F  +
Sbjct: 300 SWNSIISSYAVNDCLNGAWDLLQEMESSGVKPDIITWNSLLSGHLLQGSYENVLTNFRSL 359

Query: 192 QEEGIEPNSTTISSLLRACAGLSLLQIGEEIHCRAVKFGYYEDIYVATSLIDMYCKS 362
           Q  G +P+S +I+S L+A  GL    +G+EIH   ++     D+YV TSL+D Y K+
Sbjct: 360 QSAGFKPDSCSITSALQAVIGLGCFNLGKEIHGYIMRSKLEYDVYVCTSLVDKYIKN 416



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 26/81 (32%), Positives = 44/81 (54%)
 Frame = +3

Query: 120 WTAIISGCSQMENYKDSLELFLQMQEEGIEPNSTTISSLLRACAGLSLLQIGEEIHCRAV 299
           W  I+    + E ++D+LELF +MQ    +    TI  LL+AC  L  L  G++IH   +
Sbjct: 200 WNTIVMANLRSEKWEDALELFRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYVI 259

Query: 300 KFGYYEDIYVATSLIDMYCKS 362
           +FG   +  +  S++ MY ++
Sbjct: 260 RFGRVSNTSICNSIVSMYSRN 280


>ref|XP_003529895.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score =  169 bits (427), Expect = 3e-40
 Identities = 80/119 (67%), Positives = 100/119 (84%)
 Frame = +3

Query: 3   DLVTWNGLIFGYSLWGRSKEALLLIRQMKTLGLNPNVVSWTAIISGCSQMENYKDSLELF 182
           DLVTWN L+ GYS+ G S+EAL +I ++K+LGL PNVVSWTA+ISGC Q ENY D+L+ F
Sbjct: 468 DLVTWNSLVSGYSMSGCSEEALAVINRIKSLGLTPNVVSWTAMISGCCQNENYTDALQFF 527

Query: 183 LQMQEEGIEPNSTTISSLLRACAGLSLLQIGEEIHCRAVKFGYYEDIYVATSLIDMYCK 359
            QMQEE ++PNSTTIS+LLRACAG SLL+ GEEIHC ++K G+ +DIY+AT+LIDMY K
Sbjct: 528 SQMQEENVKPNSTTISTLLRACAGPSLLKKGEEIHCFSMKHGFVDDIYIATALIDMYSK 586



 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 39/120 (32%), Positives = 71/120 (59%)
 Frame = +3

Query: 3   DLVTWNGLIFGYSLWGRSKEALLLIRQMKTLGLNPNVVSWTAIISGCSQMENYKDSLELF 182
           +L +WN +I  Y++ G    A  L R+M++  + P++++W +++SG     +Y++ L   
Sbjct: 297 NLASWNSIISSYAVNGCLNGAWDLFREMESSSIKPDIITWNSLLSGHLLQGSYENVLTNI 356

Query: 183 LQMQEEGIEPNSTTISSLLRACAGLSLLQIGEEIHCRAVKFGYYEDIYVATSLIDMYCKS 362
             +Q  G +P+S +I+S L+A   L    +G+EIH   ++     D+YV TSL+DMY K+
Sbjct: 357 RSLQSAGFKPDSCSITSALQAVIELGYFNLGKEIHGYIMRSKLEYDVYVCTSLVDMYIKN 416


>ref|XP_002320193.1| predicted protein [Populus trichocarpa] gi|222860966|gb|EEE98508.1|
           predicted protein [Populus trichocarpa]
          Length = 498

 Score =  167 bits (422), Expect = 1e-39
 Identities = 79/120 (65%), Positives = 96/120 (80%)
 Frame = +3

Query: 3   DLVTWNGLIFGYSLWGRSKEALLLIRQMKTLGLNPNVVSWTAIISGCSQMENYKDSLELF 182
           DL+TWN L+ GYS+ G +KEAL LI  +K  GL PNVVSWTA+ISGCSQ  NY +S+E F
Sbjct: 57  DLITWNSLVAGYSMRGHTKEALALIHDIKISGLTPNVVSWTALISGCSQNGNYSESIEAF 116

Query: 183 LQMQEEGIEPNSTTISSLLRACAGLSLLQIGEEIHCRAVKFGYYEDIYVATSLIDMYCKS 362
           +QMQEEGI+PNS TISSLLR C GLSLLQ G+EIHC +++  + ED+YVAT+LID Y KS
Sbjct: 117 VQMQEEGIKPNSATISSLLRTCGGLSLLQKGKEIHCLSIRKSFIEDLYVATALIDTYSKS 176


>ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  165 bits (418), Expect = 3e-39
 Identities = 77/120 (64%), Positives = 98/120 (81%)
 Frame = +3

Query: 3   DLVTWNGLIFGYSLWGRSKEALLLIRQMKTLGLNPNVVSWTAIISGCSQMENYKDSLELF 182
           DLVTWNG+I GY++WG  KEAL ++ Q K+LGL PNVVSWTA+ISG SQ  N +DSL+ F
Sbjct: 470 DLVTWNGMISGYAMWGCGKEALAVLHQTKSLGLTPNVVSWTALISGSSQAGNNRDSLKFF 529

Query: 183 LQMQEEGIEPNSTTISSLLRACAGLSLLQIGEEIHCRAVKFGYYEDIYVATSLIDMYCKS 362
            QMQ+EG+ PNS +I+ LLRACA LSLLQ G+EIHC +++ G+ ED++VAT+LIDMY KS
Sbjct: 530 AQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKS 589



 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 42/118 (35%), Positives = 75/118 (63%), Gaps = 1/118 (0%)
 Frame = +3

Query: 12  TWNGLIFGYSLWGRSKEALLLIRQMKTLGLNPNVVSWTAIISGCSQMENYKDS-LELFLQ 188
           +WN +I  Y+  G   +A  L  ++++  + P++V+W  ++SG   +  YK+  L +  +
Sbjct: 302 SWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSG-HFLHGYKEEVLNILQR 360

Query: 189 MQEEGIEPNSTTISSLLRACAGLSLLQIGEEIHCRAVKFGYYEDIYVATSLIDMYCKS 362
           MQ EG +PNS++++S+L+A + L  L +G+E H   ++ G+  D+YV TSLIDMY K+
Sbjct: 361 MQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKN 418