BLASTX nr result
ID: Coptis21_contig00039168
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00039168 (298 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002512033.1| pentatricopeptide repeat-containing protein,... 130 1e-28 ref|XP_002274984.2| PREDICTED: pentatricopeptide repeat-containi... 128 4e-28 emb|CBI27247.3| unnamed protein product [Vitis vinifera] 128 4e-28 ref|XP_002304609.1| predicted protein [Populus trichocarpa] gi|2... 118 4e-25 ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containi... 116 2e-24 >ref|XP_002512033.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223549213|gb|EEF50702.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 319 Score = 130 bits (327), Expect = 1e-28 Identities = 63/104 (60%), Positives = 80/104 (76%), Gaps = 6/104 (5%) Frame = +3 Query: 3 QNAFLIFERMKERNVITWSA------QNRYGEKAIFMFGKMKEAGVRPNEFTFTGILSAC 164 +NA +F+ MKERNV+TW+A Q+ Y E+ + +F M+EA +RPNE TFTGIL+ C Sbjct: 127 KNAIRVFDLMKERNVMTWTALICGAAQHGYSEETLSLFNMMQEAKIRPNELTFTGILNVC 186 Query: 165 VHAGLVDEGLKYFYDMVEEYGLEPRIQHYGCVVDLLGKAGLLDK 296 H+GLV+EG KYF M+EEYGLE RIQHYGC+VDL GKAGLLD+ Sbjct: 187 AHSGLVEEGKKYF-RMIEEYGLERRIQHYGCMVDLFGKAGLLDE 229 >ref|XP_002274984.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Vitis vinifera] Length = 324 Score = 128 bits (322), Expect = 4e-28 Identities = 62/104 (59%), Positives = 83/104 (79%), Gaps = 6/104 (5%) Frame = +3 Query: 3 QNAFLIFERMKERNVITW------SAQNRYGEKAIFMFGKMKEAGVRPNEFTFTGILSAC 164 ++AF +F+ M+E+NV +W SAQ+ YG++A+ MF M++ GV+PNE TFTGILSAC Sbjct: 127 KSAFRVFDLMQEKNVASWTALICGSAQHGYGKEALSMFELMQDMGVKPNEMTFTGILSAC 186 Query: 165 VHAGLVDEGLKYFYDMVEEYGLEPRIQHYGCVVDLLGKAGLLDK 296 AGLV+EG KYF + +EEYGLEPRIQH+GC+VDL GKAGLL++ Sbjct: 187 AQAGLVEEGRKYF-NKIEEYGLEPRIQHFGCMVDLFGKAGLLEE 229 >emb|CBI27247.3| unnamed protein product [Vitis vinifera] Length = 268 Score = 128 bits (322), Expect = 4e-28 Identities = 62/104 (59%), Positives = 83/104 (79%), Gaps = 6/104 (5%) Frame = +3 Query: 3 QNAFLIFERMKERNVITW------SAQNRYGEKAIFMFGKMKEAGVRPNEFTFTGILSAC 164 ++AF +F+ M+E+NV +W SAQ+ YG++A+ MF M++ GV+PNE TFTGILSAC Sbjct: 71 KSAFRVFDLMQEKNVASWTALICGSAQHGYGKEALSMFELMQDMGVKPNEMTFTGILSAC 130 Query: 165 VHAGLVDEGLKYFYDMVEEYGLEPRIQHYGCVVDLLGKAGLLDK 296 AGLV+EG KYF + +EEYGLEPRIQH+GC+VDL GKAGLL++ Sbjct: 131 AQAGLVEEGRKYF-NKIEEYGLEPRIQHFGCMVDLFGKAGLLEE 173 >ref|XP_002304609.1| predicted protein [Populus trichocarpa] gi|222842041|gb|EEE79588.1| predicted protein [Populus trichocarpa] Length = 431 Score = 118 bits (296), Expect = 4e-25 Identities = 58/104 (55%), Positives = 78/104 (75%), Gaps = 6/104 (5%) Frame = +3 Query: 3 QNAFLIFERMKERNVITWSA------QNRYGEKAIFMFGKMKEAGVRPNEFTFTGILSAC 164 +NA +F M+ERNV TW+A Q+ + ++ + +F M+EAGVRPNE TFTGIL+AC Sbjct: 239 KNAVWVFVLMQERNVSTWTALICGAAQHGFCQEVLSLFKMMQEAGVRPNEMTFTGILNAC 298 Query: 165 VHAGLVDEGLKYFYDMVEEYGLEPRIQHYGCVVDLLGKAGLLDK 296 GL++EG KYF M++E GLEPRIQHYGC+VD+ GKAGLL++ Sbjct: 299 ARKGLIEEGRKYF-KMIKETGLEPRIQHYGCMVDMFGKAGLLEE 341 >ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530 [Vitis vinifera] Length = 643 Score = 116 bits (290), Expect = 2e-24 Identities = 55/104 (52%), Positives = 76/104 (73%), Gaps = 6/104 (5%) Frame = +3 Query: 3 QNAFLIFERMKERNVITWSAQ------NRYGEKAIFMFGKMKEAGVRPNEFTFTGILSAC 164 + A+ IF+RM ERNV++WSA + YG +AI F +M++ GV P++ T TG+LSAC Sbjct: 323 EKAYSIFKRMDERNVVSWSAMISGFAMHGYGREAIEAFEQMQQLGVSPDDQTLTGVLSAC 382 Query: 165 VHAGLVDEGLKYFYDMVEEYGLEPRIQHYGCVVDLLGKAGLLDK 296 H GLVD+GL +F M + +G+EP I HYGC+VDLLG+AGLLD+ Sbjct: 383 SHCGLVDDGLMFFDRMSKVFGIEPNIHHYGCMVDLLGRAGLLDQ 426