BLASTX nr result
ID: Coptis21_contig00039142
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00039142
(635 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002330082.1| predicted protein [Populus trichocarpa] gi|2... 274 9e-72
ref|XP_002512521.1| pentatricopeptide repeat-containing protein,... 272 3e-71
emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera] 264 1e-68
ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containi... 259 2e-67
ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containi... 251 6e-65
>ref|XP_002330082.1| predicted protein [Populus trichocarpa] gi|222871507|gb|EEF08638.1|
predicted protein [Populus trichocarpa]
Length = 665
Score = 274 bits (701), Expect = 9e-72
Identities = 127/211 (60%), Positives = 166/211 (78%)
Frame = -2
Query: 634 IENNDANQAILFFREMIVANSIPNKFTFPSLFKACTDSGALVEGLQIHNHVIKHGLQGDG 455
++NN+ +AI + +M++A++ PNKFT+P+LFKACT + A EG+Q+H HVIK GL GD
Sbjct: 106 LQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDV 165
Query: 454 HIRSAGIQMYATCGYTREARQILDMREESDAVCWNAMIDGYFKCGDVDAARGLFESMEHK 275
HIRSAGIQMY + G AR++L SD +C+NAMIDGY KCG+V+AA+ LF SME K
Sbjct: 166 HIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDK 225
Query: 274 TVGSWNTMISGYAKCGRIDDAKELFMEMPARDDVSWSAMIDGYMKGGYCKEALAIFQEMQ 95
VGSWN M+SG AKCG I++A+ELF EM ++++SWSAMIDGY+KGGY KEAL +F MQ
Sbjct: 226 NVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQ 285
Query: 94 NQGVRPKKFVLSSALSACANVGSFDQGRWIH 2
+ +RP+KFVLSS L+ACAN+G+ DQGRWIH
Sbjct: 286 REEIRPRKFVLSSVLAACANLGALDQGRWIH 316
Score = 66.2 bits (160), Expect = 5e-09
Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 9/209 (4%)
Frame = -2
Query: 613 QAILFFREMIVANSIPNKFTFPSLFKACTDSGALVEGLQIHNHVIKHGLQGDGHIRSAGI 434
+A+ F M P KF S+ AC + GAL +G IH +V + D + +A +
Sbjct: 276 EALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALV 335
Query: 433 QMYATCGYTREARQILDMREESDAVCWNAMIDGYFKCGDVDAARGLFESMEHKTVG---- 266
MYA CG A + + E+ + WNAMI G G + A LF M+ +
Sbjct: 336 DMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGI 395
Query: 265 SWNTMISGYAKCGRIDDAKELFMEMPARDDVS-----WSAMIDGYMKGGYCKEALAIFQE 101
+ ++S A G +D+ +F M + + ++D + G EA +
Sbjct: 396 TLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEV--- 452
Query: 100 MQNQGVRPKKFVLSSALSACANVGSFDQG 14
M + + P V + L AC G + G
Sbjct: 453 MYSMPMEPSAAVWGALLGACRKHGDVELG 481
>ref|XP_002512521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223548482|gb|EEF49973.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 422
Score = 272 bits (696), Expect = 3e-71
Identities = 127/211 (60%), Positives = 166/211 (78%)
Frame = -2
Query: 634 IENNDANQAILFFREMIVANSIPNKFTFPSLFKACTDSGALVEGLQIHNHVIKHGLQGDG 455
++N++ +AI F+ +M+ AN+ PNKFT+PSL KAC + A EG+Q+H HVIK GL GD
Sbjct: 105 LDNDEPFKAICFYYKMVAANARPNKFTYPSLLKACGVATAAKEGVQLHGHVIKQGLTGDV 164
Query: 454 HIRSAGIQMYATCGYTREARQILDMREESDAVCWNAMIDGYFKCGDVDAARGLFESMEHK 275
HIRSAGIQMYAT G+ AR++LD ESD +C+NAMIDGY+K GDVD+A+ LFE ME +
Sbjct: 165 HIRSAGIQMYATLGHMAAARRMLDEDGESDVICFNAMIDGYYKFGDVDSAKELFEKMEDR 224
Query: 274 TVGSWNTMISGYAKCGRIDDAKELFMEMPARDDVSWSAMIDGYMKGGYCKEALAIFQEMQ 95
+VGSWN M+SG AK G + +A+ELF +M +D++SWS+MIDGY+KGG KEAL +F MQ
Sbjct: 225 SVGSWNVMVSGLAKNGMVKEARELFNDMREKDEISWSSMIDGYIKGGNYKEALEVFNVMQ 284
Query: 94 NQGVRPKKFVLSSALSACANVGSFDQGRWIH 2
+ +RPKKFVLSS L+ACAN+G+ DQGRWIH
Sbjct: 285 EEKIRPKKFVLSSVLAACANLGALDQGRWIH 315
Score = 65.5 bits (158), Expect = 8e-09
Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 4/152 (2%)
Frame = -2
Query: 634 IENNDANQAILFFREMIVANSIPNKFTFPSLFKACTDSGALVEGLQIHNHVIKHGLQGDG 455
I+ + +A+ F M P KF S+ AC + GAL +G IH +V K+ + D
Sbjct: 268 IKGGNYKEALEVFNVMQEEKIRPKKFVLSSVLAACANLGALDQGRWIHAYVKKNPMYLDA 327
Query: 454 HIRSAGIQMYATCGYTREARQILDMREESDAVCWNAMIDGYFKCGDVDAARGLFESMEHK 275
+ +A + MYA CG A + + +E + WNAMI G G + A LF M+ +
Sbjct: 328 VLGTALVDMYAKCGRLDMAWDVFETMKEKEVFTWNAMICGLAMHGRAEDAIKLFLKMQKE 387
Query: 274 TVGS----WNTMISGYAKCGRIDDAKELFMEM 191
V S + +++ A G +D+ + M
Sbjct: 388 KVRSNEITFVGLLNACAHKGMVDEGLNILDSM 419
>emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
Length = 673
Score = 264 bits (674), Expect = 1e-68
Identities = 124/213 (58%), Positives = 167/213 (78%), Gaps = 2/213 (0%)
Frame = -2
Query: 634 IENNDANQAILFFREMIVANSIPNKFTFPSLFKACTDSGALVEGLQIHNHVIKHGLQGDG 455
IENN+ +AIL + EM+VA+S PNK+T+P++ KAC+DSG + EG+Q+H H++KHGL GDG
Sbjct: 114 IENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGLGGDG 173
Query: 454 HIRSAGIQMYATCGYTREARQILDMRE-ESDAVCWNAMIDGYFKCGDVDAARGLFESMEH 278
HI S+ I+MYA+ G EAR+ILD + E DAVCWNAMIDGY + G+V+AAR LFE M
Sbjct: 174 HILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPD 233
Query: 277 KT-VGSWNTMISGYAKCGRIDDAKELFMEMPARDDVSWSAMIDGYMKGGYCKEALAIFQE 101
++ + +WN MISG+++CG ++ A+E F EM RD++SWSAMIDGY++ G EAL IF +
Sbjct: 234 RSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQ 293
Query: 100 MQNQGVRPKKFVLSSALSACANVGSFDQGRWIH 2
MQ + +RP+KFVL S LSACAN+G+ DQGRWIH
Sbjct: 294 MQKEKIRPRKFVLPSVLSACANLGALDQGRWIH 326
Score = 73.2 bits (178), Expect = 4e-11
Identities = 52/206 (25%), Positives = 90/206 (43%), Gaps = 6/206 (2%)
Frame = -2
Query: 613 QAILFFREMIVANSIPNKFTFPSLFKACTDSGALVEGLQIHNHVIKHGLQGDGHIRSAGI 434
+A+ F +M P KF PS+ AC + GAL +G IH + ++ +Q DG + ++ +
Sbjct: 286 EALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLV 345
Query: 433 QMYATCGYTREARQILDMREESDAVCWNAMIDGYFKCGDVDAARGLFESME-HKTVGSWN 257
MYA CG A ++ + + WNAMI G G + A LF M+ + ++
Sbjct: 346 DMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDIYPNEITFV 405
Query: 256 TMISGYAKCGRIDDAKELFMEMPARDDVS-----WSAMIDGYMKGGYCKEALAIFQEMQN 92
+++ A G + +F M V + ++D + G EA + +
Sbjct: 406 GVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPT 465
Query: 91 QGVRPKKFVLSSALSACANVGSFDQG 14
+ P V + L AC G+ + G
Sbjct: 466 E---PTPAVWGALLGACRKHGNVELG 488
>ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
isoform 1 [Vitis vinifera]
Length = 672
Score = 259 bits (663), Expect = 2e-67
Identities = 122/213 (57%), Positives = 166/213 (77%), Gaps = 2/213 (0%)
Frame = -2
Query: 634 IENNDANQAILFFREMIVANSIPNKFTFPSLFKACTDSGALVEGLQIHNHVIKHGLQGDG 455
IENN+ +AIL + EM+VA+ PNK+T+P++ KAC+D+G + EG+Q+H H++KHGL GDG
Sbjct: 113 IENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDG 172
Query: 454 HIRSAGIQMYATCGYTREARQILDMRE-ESDAVCWNAMIDGYFKCGDVDAARGLFESMEH 278
HI S+ I+MYA+ G EAR+ILD + E DAVCWNAMIDGY + G+V+AAR LFE M
Sbjct: 173 HILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPD 232
Query: 277 KT-VGSWNTMISGYAKCGRIDDAKELFMEMPARDDVSWSAMIDGYMKGGYCKEALAIFQE 101
++ + +WN MISG+++CG ++ A+E F EM RD++SWSAMIDGY++ G EAL IF +
Sbjct: 233 RSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQ 292
Query: 100 MQNQGVRPKKFVLSSALSACANVGSFDQGRWIH 2
MQ + +RP+KFVL S LSACAN+G+ DQGRWIH
Sbjct: 293 MQKEKIRPRKFVLPSVLSACANLGALDQGRWIH 325
Score = 73.6 bits (179), Expect = 3e-11
Identities = 48/182 (26%), Positives = 82/182 (45%), Gaps = 2/182 (1%)
Frame = -2
Query: 613 QAILFFREMIVANSIPNKFTFPSLFKACTDSGALVEGLQIHNHVIKHGLQGDGHIRSAGI 434
+A+ F +M P KF PS+ AC + GAL +G IH + ++ +Q DG + ++ +
Sbjct: 285 EALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLV 344
Query: 433 QMYATCGYTREARQILDMREESDAVCWNAMIDGYFKCGDVDAARGLFESMEHKTVGSWNT 254
MYA CG A ++ + + WNAMI
Sbjct: 345 DMYAKCGRIDLAWEVFEKMSNKEVSSWNAMI----------------------------- 375
Query: 253 MISGYAKCGRIDDAKELFMEMPAR-DDVSWSAMIDGYMKGGYCKEALAIFQEMQNQ-GVR 80
G A GR +DA +LF +M +++++ +++ GG ++ L IF M+ + GV
Sbjct: 376 --GGLAMHGRAEDAIDLFSKMDINPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVE 433
Query: 79 PK 74
P+
Sbjct: 434 PQ 435
>ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 251 bits (642), Expect = 6e-65
Identities = 117/211 (55%), Positives = 158/211 (74%)
Frame = -2
Query: 634 IENNDANQAILFFREMIVANSIPNKFTFPSLFKACTDSGALVEGLQIHNHVIKHGLQGDG 455
+ENN +AI F+ M++ ++ PNKFT+P+LFKAC+ + A+ EG QIH HV+KHG+ D
Sbjct: 109 LENNKLFKAIYFYGRMVI-DARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDV 167
Query: 454 HIRSAGIQMYATCGYTREARQILDMREESDAVCWNAMIDGYFKCGDVDAARGLFESMEHK 275
HI+SAGIQMYA+ G +AR++ ESD VCWN MIDGY KCG ++AA+GLF M K
Sbjct: 168 HIKSAGIQMYASFGRLEDARKMF-YSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVK 226
Query: 274 TVGSWNTMISGYAKCGRIDDAKELFMEMPARDDVSWSAMIDGYMKGGYCKEALAIFQEMQ 95
+GSWN MI+G AK G + DA++LF EM RD++SWS+M+DGY+ G KEAL IFQ+MQ
Sbjct: 227 NIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQ 286
Query: 94 NQGVRPKKFVLSSALSACANVGSFDQGRWIH 2
+ RP +F+LSS L+AC+N+G+ DQGRW+H
Sbjct: 287 REETRPGRFILSSVLAACSNIGAIDQGRWVH 317
Score = 70.1 bits (170), Expect = 3e-10
Identities = 51/207 (24%), Positives = 92/207 (44%), Gaps = 9/207 (4%)
Frame = -2
Query: 613 QAILFFREMIVANSIPNKFTFPSLFKACTDSGALVEGLQIHNHVIKHGLQGDGHIRSAGI 434
+A+ F++M + P +F S+ AC++ GA+ +G +H ++ ++ ++ D + +A +
Sbjct: 277 EALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALL 336
Query: 433 QMYATCGYTREARQILDMREESDAVCWNAMIDGYFKCGDVDAARGLFESMEHKTVGSWNT 254
MYA CG ++ + +E + WNAMI G G + A LF ++ +
Sbjct: 337 DMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGI 396
Query: 253 MISGY----AKCGRIDDAKELFMEMPARDDVS-----WSAMIDGYMKGGYCKEALAIFQE 101
+ G A G +D +F M V + M+D + G EA +
Sbjct: 397 TLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINS 456
Query: 100 MQNQGVRPKKFVLSSALSACANVGSFD 20
M ++P V + L AC G+FD
Sbjct: 457 MP---MKPNAAVWGALLGACRIHGNFD 480