BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00039127
         (331 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...   100   2e-19
gb|ABA96650.1| retrotransposon protein, putative, unclassified [...    94   1e-17
emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulga...    91   1e-16
gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...    88   6e-16
gb|EEE69144.1| hypothetical protein OsJ_28268 [Oryza sativa Japo...    88   8e-16

>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease
           H; Endonuclease/exonuclease/phosphatase [Medicago
           truncatula]
          Length = 1246

 Score =  100 bits (248), Expect = 2e-19
 Identities = 47/110 (42%), Positives = 69/110 (62%)
 Frame = +1

Query: 1   LMDHIPLLVTESQNAFLMAIPDWMEITTTVLNMDPNSSPGPDGFQGMFFQKCWSIVRVDV 180
           ++D IP LV+   N  L+ +P W E+   V  ++ + +PGP+GF G F+Q  W IV  DV
Sbjct: 422 VVDTIPSLVSNVDNNSLLRLPLWGEVKNAVFTLNGDGAPGPNGFGGHFYQTYWDIVGADV 481

Query: 181 CRAICSFFHSQNIPQGLNSNFLVLIPKCKNAMEIGQFRPLCLSNFLFKII 330
            +++  FF S  + Q +NSN +VLIPK   A  +G +RP+ L+NF FKII
Sbjct: 482 IQSVQDFFISGQLAQNINSNLIVLIPKVPGARVMGDYRPIALANFQFKII 531


>gb|ABA96650.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1100

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 44/110 (40%), Positives = 68/110 (61%)
 Frame = +1

Query: 1   LMDHIPLLVTESQNAFLMAIPDWMEITTTVLNMDPNSSPGPDGFQGMFFQKCWSIVRVDV 180
           L+D I L VTE  N  L       EI+  +  + P  +PGPDGF   FFQ+ W +++ DV
Sbjct: 525 LLDLIMLKVTEQMNEDLCKAFSDKEISDALFQIGPIKAPGPDGFPARFFQRNWEVLKNDV 584

Query: 181 CRAICSFFHSQNIPQGLNSNFLVLIPKCKNAMEIGQFRPLCLSNFLFKII 330
           C+A+  FF  + +P+G+N+  +VLIPK K + E+  FRP+ L N ++K++
Sbjct: 585 CKAVKLFFDQKVMPEGVNTTAIVLIPKKKESKELKDFRPISLCNVIYKVV 634


>emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1389

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 42/103 (40%), Positives = 64/103 (62%)
 Frame = +1

Query: 22  LVTESQNAFLMAIPDWMEITTTVLNMDPNSSPGPDGFQGMFFQKCWSIVRVDVCRAICSF 201
           +V+E+ NA+L +     EI   V ++ P+ SPGPDGF   FFQK W+++   VCRA+ +F
Sbjct: 431 IVSEADNAYLTSAVSPEEIKNAVFDLAPDKSPGPDGFPPYFFQKYWTLIGKSVCRAVQAF 490

Query: 202 FHSQNIPQGLNSNFLVLIPKCKNAMEIGQFRPLCLSNFLFKII 330
           FHS  + + +N  FL LIPK    +    FRP+ L + ++K+I
Sbjct: 491 FHSGYMLKEVNHTFLALIPKVDKPVNANHFRPISLCSTIYKVI 533


>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 44/97 (45%), Positives = 62/97 (63%)
 Frame = +1

Query: 40  NAFLMAIPDWMEITTTVLNMDPNSSPGPDGFQGMFFQKCWSIVRVDVCRAICSFFHSQNI 219
           N  L  IP   EI   V +++ +S+PGPDGF   F+Q  W IV+ DV +A+  FF++  I
Sbjct: 109 NHALTMIPSNDEIKQAVFSLNNDSAPGPDGFGSCFYQIYWDIVKEDVIKAVLQFFNTGWI 168

Query: 220 PQGLNSNFLVLIPKCKNAMEIGQFRPLCLSNFLFKII 330
               N+N L+LIPK +NA  + QFRP+ ++NF FKII
Sbjct: 169 LPNFNANTLILIPKTQNADSMDQFRPIAMANFKFKII 205


>gb|EEE69144.1| hypothetical protein OsJ_28268 [Oryza sativa Japonica Group]
          Length = 1256

 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 40/102 (39%), Positives = 61/102 (59%)
 Frame = +1

Query: 25  VTESQNAFLMAIPDWMEITTTVLNMDPNSSPGPDGFQGMFFQKCWSIVRVDVCRAICSFF 204
           VT++ N  L       EI   +  + P  +PGPDGF G F+Q+ W+I++ D+ RA+  FF
Sbjct: 495 VTDAMNEELCKTVSEEEIANALFQIGPLKAPGPDGFPGRFYQRNWAILKDDIVRAVQEFF 554

Query: 205 HSQNIPQGLNSNFLVLIPKCKNAMEIGQFRPLCLSNFLFKII 330
            S  +P G+N   +VLIPK +   E+  FRP+ L N ++KI+
Sbjct: 555 SSGTMPSGVNETAIVLIPKTEQPQELKDFRPISLCNVVYKIV 596