BLASTX nr result
ID: Coptis21_contig00039127
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00039127 (331 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas... 100 2e-19 gb|ABA96650.1| retrotransposon protein, putative, unclassified [... 94 1e-17 emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulga... 91 1e-16 gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas... 88 6e-16 gb|EEE69144.1| hypothetical protein OsJ_28268 [Oryza sativa Japo... 88 8e-16 >gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H; Endonuclease/exonuclease/phosphatase [Medicago truncatula] Length = 1246 Score = 100 bits (248), Expect = 2e-19 Identities = 47/110 (42%), Positives = 69/110 (62%) Frame = +1 Query: 1 LMDHIPLLVTESQNAFLMAIPDWMEITTTVLNMDPNSSPGPDGFQGMFFQKCWSIVRVDV 180 ++D IP LV+ N L+ +P W E+ V ++ + +PGP+GF G F+Q W IV DV Sbjct: 422 VVDTIPSLVSNVDNNSLLRLPLWGEVKNAVFTLNGDGAPGPNGFGGHFYQTYWDIVGADV 481 Query: 181 CRAICSFFHSQNIPQGLNSNFLVLIPKCKNAMEIGQFRPLCLSNFLFKII 330 +++ FF S + Q +NSN +VLIPK A +G +RP+ L+NF FKII Sbjct: 482 IQSVQDFFISGQLAQNINSNLIVLIPKVPGARVMGDYRPIALANFQFKII 531 >gb|ABA96650.1| retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group] Length = 1100 Score = 94.0 bits (232), Expect = 1e-17 Identities = 44/110 (40%), Positives = 68/110 (61%) Frame = +1 Query: 1 LMDHIPLLVTESQNAFLMAIPDWMEITTTVLNMDPNSSPGPDGFQGMFFQKCWSIVRVDV 180 L+D I L VTE N L EI+ + + P +PGPDGF FFQ+ W +++ DV Sbjct: 525 LLDLIMLKVTEQMNEDLCKAFSDKEISDALFQIGPIKAPGPDGFPARFFQRNWEVLKNDV 584 Query: 181 CRAICSFFHSQNIPQGLNSNFLVLIPKCKNAMEIGQFRPLCLSNFLFKII 330 C+A+ FF + +P+G+N+ +VLIPK K + E+ FRP+ L N ++K++ Sbjct: 585 CKAVKLFFDQKVMPEGVNTTAIVLIPKKKESKELKDFRPISLCNVIYKVV 634 >emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulgaris] Length = 1389 Score = 90.9 bits (224), Expect = 1e-16 Identities = 42/103 (40%), Positives = 64/103 (62%) Frame = +1 Query: 22 LVTESQNAFLMAIPDWMEITTTVLNMDPNSSPGPDGFQGMFFQKCWSIVRVDVCRAICSF 201 +V+E+ NA+L + EI V ++ P+ SPGPDGF FFQK W+++ VCRA+ +F Sbjct: 431 IVSEADNAYLTSAVSPEEIKNAVFDLAPDKSPGPDGFPPYFFQKYWTLIGKSVCRAVQAF 490 Query: 202 FHSQNIPQGLNSNFLVLIPKCKNAMEIGQFRPLCLSNFLFKII 330 FHS + + +N FL LIPK + FRP+ L + ++K+I Sbjct: 491 FHSGYMLKEVNHTFLALIPKVDKPVNANHFRPISLCSTIYKVI 533 >gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago truncatula] Length = 528 Score = 88.2 bits (217), Expect = 6e-16 Identities = 44/97 (45%), Positives = 62/97 (63%) Frame = +1 Query: 40 NAFLMAIPDWMEITTTVLNMDPNSSPGPDGFQGMFFQKCWSIVRVDVCRAICSFFHSQNI 219 N L IP EI V +++ +S+PGPDGF F+Q W IV+ DV +A+ FF++ I Sbjct: 109 NHALTMIPSNDEIKQAVFSLNNDSAPGPDGFGSCFYQIYWDIVKEDVIKAVLQFFNTGWI 168 Query: 220 PQGLNSNFLVLIPKCKNAMEIGQFRPLCLSNFLFKII 330 N+N L+LIPK +NA + QFRP+ ++NF FKII Sbjct: 169 LPNFNANTLILIPKTQNADSMDQFRPIAMANFKFKII 205 >gb|EEE69144.1| hypothetical protein OsJ_28268 [Oryza sativa Japonica Group] Length = 1256 Score = 87.8 bits (216), Expect = 8e-16 Identities = 40/102 (39%), Positives = 61/102 (59%) Frame = +1 Query: 25 VTESQNAFLMAIPDWMEITTTVLNMDPNSSPGPDGFQGMFFQKCWSIVRVDVCRAICSFF 204 VT++ N L EI + + P +PGPDGF G F+Q+ W+I++ D+ RA+ FF Sbjct: 495 VTDAMNEELCKTVSEEEIANALFQIGPLKAPGPDGFPGRFYQRNWAILKDDIVRAVQEFF 554 Query: 205 HSQNIPQGLNSNFLVLIPKCKNAMEIGQFRPLCLSNFLFKII 330 S +P G+N +VLIPK + E+ FRP+ L N ++KI+ Sbjct: 555 SSGTMPSGVNETAIVLIPKTEQPQELKDFRPISLCNVVYKIV 596