BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00039064
         (230 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002305195.1| predicted protein [Populus trichocarpa] gi|2...    89   5e-16
ref|NP_849849.1| pentatricopeptide repeat-containing protein [Ar...    86   2e-15
emb|CAN82481.1| hypothetical protein VITISV_012747 [Vitis vinifera]    86   4e-15
ref|XP_003633738.1| PREDICTED: pentatricopeptide repeat-containi...    85   7e-15
ref|XP_002531188.1| pentatricopeptide repeat-containing protein,...    82   6e-14

>ref|XP_002305195.1| predicted protein [Populus trichocarpa] gi|222848159|gb|EEE85706.1|
           predicted protein [Populus trichocarpa]
          Length = 556

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 36/70 (51%), Positives = 54/70 (77%)
 Frame = -2

Query: 211 WSTMSEKFHSMNITNTIIDKVLVELKDPLDAKKALSFFHWSSHQFRNIEHGVESYCMVVH 32
           W T++ KF S+ + N ++  VL+ELK+P DAK+AL FFHWS+   RN  HGV+SYC+++H
Sbjct: 60  WDTLNRKFESLQLNNLLVKNVLLELKEPTDAKRALGFFHWSAR--RNFVHGVQSYCLMIH 117

Query: 31  TLVRARLLVD 2
            L++ARL++D
Sbjct: 118 ILIQARLIMD 127


>ref|NP_849849.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|122215314|sp|Q3ECH5.1|PP107_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g66345, mitochondrial; Flags: Precursor
           gi|332196377|gb|AEE34498.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 544

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 36/70 (51%), Positives = 56/70 (80%)
 Frame = -2

Query: 211 WSTMSEKFHSMNITNTIIDKVLVELKDPLDAKKALSFFHWSSHQFRNIEHGVESYCMVVH 32
           W T+S KF S+++++++I+ +L+  K+P  AK+ALSFFHWSSH  RN+ HG++SY + +H
Sbjct: 63  WETLSTKFSSIDLSDSLIETILLRFKNPETAKQALSFFHWSSHT-RNLRHGIKSYALTIH 121

Query: 31  TLVRARLLVD 2
            LV+ARLL+D
Sbjct: 122 ILVKARLLID 131


>emb|CAN82481.1| hypothetical protein VITISV_012747 [Vitis vinifera]
          Length = 642

 Score = 85.5 bits (210), Expect = 4e-15
 Identities = 36/70 (51%), Positives = 54/70 (77%)
 Frame = -2

Query: 211 WSTMSEKFHSMNITNTIIDKVLVELKDPLDAKKALSFFHWSSHQFRNIEHGVESYCMVVH 32
           W  ++++F S+ +T + + +VL+ELK P+DAK+AL FFHWS+ Q +N+EHGV SYC+ +H
Sbjct: 54  WDALNQRFGSLELTESFVGRVLLELKKPIDAKQALGFFHWSA-QCKNLEHGVASYCITIH 112

Query: 31  TLVRARLLVD 2
            LV A LL+D
Sbjct: 113 ILVGAHLLMD 122


>ref|XP_003633738.1| PREDICTED: pentatricopeptide repeat-containing protein At1g66345,
           mitochondrial-like [Vitis vinifera]
          Length = 547

 Score = 84.7 bits (208), Expect = 7e-15
 Identities = 35/70 (50%), Positives = 55/70 (78%)
 Frame = -2

Query: 211 WSTMSEKFHSMNITNTIIDKVLVELKDPLDAKKALSFFHWSSHQFRNIEHGVESYCMVVH 32
           W  ++++F S+ +T + + +VL+ELK P+DAK+AL FFHWS+ Q +N+EHG+ SYC+ +H
Sbjct: 54  WDALNQRFGSLELTESFVGRVLLELKKPIDAKQALGFFHWSA-QCKNLEHGLASYCITIH 112

Query: 31  TLVRARLLVD 2
            LV A+LL+D
Sbjct: 113 ILVGAQLLMD 122


>ref|XP_002531188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223529229|gb|EEF31203.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 619

 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 37/70 (52%), Positives = 55/70 (78%)
 Frame = -2

Query: 211 WSTMSEKFHSMNITNTIIDKVLVELKDPLDAKKALSFFHWSSHQFRNIEHGVESYCMVVH 32
           W ++S KF  + + + +++KVL+ELK+P+DAK+AL FFHWS+ Q +N  HGV SYC++V+
Sbjct: 60  WVSLSGKFQYVELNHLLVEKVLLELKEPIDAKRALGFFHWSA-QRKNFVHGVWSYCLMVN 118

Query: 31  TLVRARLLVD 2
            LVRA+LL D
Sbjct: 119 ILVRAQLLND 128