BLASTX nr result

ID: Coptis21_contig00038872 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00038872
         (384 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002531279.1| Prenylated Rab acceptor protein, putative [R...    94   2e-17
emb|CAN73850.1| hypothetical protein VITISV_021777 [Vitis vinifera]    92   3e-17
ref|XP_002328337.1| predicted protein [Populus trichocarpa] gi|2...    92   6e-17
ref|XP_002264376.1| PREDICTED: PRA1 family protein E [Vitis vini...    91   7e-17
ref|XP_004156493.1| PREDICTED: PRA1 family protein E-like [Cucum...    84   1e-14

>ref|XP_002531279.1| Prenylated Rab acceptor protein, putative [Ricinus communis]
           gi|223529112|gb|EEF31092.1| Prenylated Rab acceptor
           protein, putative [Ricinus communis]
          Length = 216

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 48/99 (48%), Positives = 62/99 (62%), Gaps = 13/99 (13%)
 Frame = -2

Query: 308 YGTIPTASTSTST-------------LQFITNAKEKGQSIISTRRPWRELLDPSAFSRPY 168
           YGTIP  +T+T+T             L FI+ A    QS+I+TRRPW+ELL+PS+FS P 
Sbjct: 10  YGTIPATTTTTTTTHFSQPLPTTATSLTFISRATSATQSVIATRRPWKELLNPSSFSCPC 69

Query: 167 NYNEAMTRIKTNVYHFRVNYTXXXXXXXXXXXLWHPISM 51
           NY+EAM+R+K NV +FRVNY            LWHP+SM
Sbjct: 70  NYSEAMSRVKYNVNYFRVNYAMVVLSVLFLSLLWHPVSM 108


>emb|CAN73850.1| hypothetical protein VITISV_021777 [Vitis vinifera]
          Length = 206

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 50/100 (50%), Positives = 64/100 (64%), Gaps = 6/100 (6%)
 Frame = -2

Query: 332 MSKPSQPNYGTIPTAST---STSTLQ---FITNAKEKGQSIISTRRPWRELLDPSAFSRP 171
           MS  S   YGT+P AS    S+ST +   FI+ A ++ Q++++TRRPWRE LD SA SRP
Sbjct: 1   MSLKSPAGYGTLPNASPAVPSSSTSEQFTFISRATQRTQTLMATRRPWREFLDYSALSRP 60

Query: 170 YNYNEAMTRIKTNVYHFRVNYTXXXXXXXXXXXLWHPISM 51
           +NY++AM RIK NV +FRVNY            LWHP SM
Sbjct: 61  HNYSDAMARIKRNVNYFRVNYAMVMLFILFVSLLWHPTSM 100


>ref|XP_002328337.1| predicted protein [Populus trichocarpa] gi|222838052|gb|EEE76417.1|
           predicted protein [Populus trichocarpa]
          Length = 212

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 48/105 (45%), Positives = 64/105 (60%), Gaps = 11/105 (10%)
 Frame = -2

Query: 332 MSKPSQPNYGTIPTASTSTST-----------LQFITNAKEKGQSIISTRRPWRELLDPS 186
           MS+ +Q  YGTIPT  ++T+T           L FI+      Q++I+TRRPW+EL+  S
Sbjct: 1   MSRKAQAGYGTIPTTISATTTTTTKSPQSPTTLTFISRVSTSTQTLIATRRPWQELIKLS 60

Query: 185 AFSRPYNYNEAMTRIKTNVYHFRVNYTXXXXXXXXXXXLWHPISM 51
           +F RP NYN+A++RIK NV +FRVNY            LWHPISM
Sbjct: 61  SFIRPNNYNDAISRIKFNVNYFRVNYAMIFLAILFLSLLWHPISM 105


>ref|XP_002264376.1| PREDICTED: PRA1 family protein E [Vitis vinifera]
          Length = 206

 Score = 91.3 bits (225), Expect = 7e-17
 Identities = 49/100 (49%), Positives = 63/100 (63%), Gaps = 6/100 (6%)
 Frame = -2

Query: 332 MSKPSQPNYGTIPTAST---STSTLQ---FITNAKEKGQSIISTRRPWRELLDPSAFSRP 171
           MS  S   YGT+P AS    S+ST +   FI+ A ++ Q++++TRRPWRE LD S  SRP
Sbjct: 1   MSLKSPAGYGTLPNASAAVPSSSTSEQFTFISRATQRTQTLMATRRPWREFLDYSVLSRP 60

Query: 170 YNYNEAMTRIKTNVYHFRVNYTXXXXXXXXXXXLWHPISM 51
           +NY++AM RIK NV +FRVNY            LWHP SM
Sbjct: 61  HNYSDAMARIKRNVNYFRVNYAMVMLFILFVSLLWHPTSM 100


>ref|XP_004156493.1| PREDICTED: PRA1 family protein E-like [Cucumis sativus]
          Length = 213

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 46/96 (47%), Positives = 58/96 (60%), Gaps = 5/96 (5%)
 Frame = -2

Query: 323 PSQPNYGTIPTASTST-----STLQFITNAKEKGQSIISTRRPWRELLDPSAFSRPYNYN 159
           PSQ    TIPT S+       S+  FI  AK   QS+I+T+RPWREL D SAFS P++Y+
Sbjct: 14  PSQAA-ATIPTTSSGAPPSFPSSSSFIERAKTTTQSLIATQRPWRELFDFSAFSLPFSYD 72

Query: 158 EAMTRIKTNVYHFRVNYTXXXXXXXXXXXLWHPISM 51
           +AM RI+ NV +FRVNY             WHPIS+
Sbjct: 73  DAMARIRQNVNYFRVNYALVMLIIVFLSLFWHPISI 108


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