BLASTX nr result
ID: Coptis21_contig00038775
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00038775
(352 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containi... 116 2e-24
emb|CBI20961.3| unnamed protein product [Vitis vinifera] 115 4e-24
ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containi... 115 4e-24
ref|XP_002516590.1| pentatricopeptide repeat-containing protein,... 113 1e-23
ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containi... 113 2e-23
>ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Vitis vinifera]
Length = 541
Score = 116 bits (291), Expect = 2e-24
Identities = 56/117 (47%), Positives = 83/117 (70%)
Frame = -1
Query: 352 LEYFKQMRILCVDSFDEFSLVSVSSACANMGALVLGKWVHGLVCKTGFCDVVPLGNALVD 173
LE+F++M+++ ++ DE SLVSV ACA +GAL LGKW+H K GF + + NAL++
Sbjct: 234 LEFFRRMQMVGIEP-DEISLVSVLPACAQLGALELGKWIHFYADKAGFLRNICVCNALIE 292
Query: 172 MYGKCGNLVDACKVFDEMRGRDIVSWSTMIDVLAMHGCGRRAIDVFDEMERFGIEPD 2
MY KCG++ + ++FD+M RD++SWSTMI LA HG AI++F EM++ IEP+
Sbjct: 293 MYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPN 349
Score = 75.1 bits (183), Expect = 6e-12
Identities = 43/95 (45%), Positives = 57/95 (60%)
Frame = -1
Query: 307 DEFSLVSVSSACANMGALVLGKWVHGLVCKTGFCDVVPLGNALVDMYGKCGNLVDACKVF 128
D+F+ V +CA + LGK VHG V K G + N+LV+MY KC +L DA KVF
Sbjct: 116 DKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVF 175
Query: 127 DEMRGRDIVSWSTMIDVLAMHGCGRRAIDVFDEME 23
+EM RD VSW+T+I G RRA +F+EM+
Sbjct: 176 EEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQ 210
>emb|CBI20961.3| unnamed protein product [Vitis vinifera]
Length = 553
Score = 115 bits (288), Expect = 4e-24
Identities = 56/116 (48%), Positives = 82/116 (70%)
Frame = -1
Query: 352 LEYFKQMRILCVDSFDEFSLVSVSSACANMGALVLGKWVHGLVCKTGFCDVVPLGNALVD 173
LE+F++M+++ ++ DE SLVSV CA +GAL LGKW+H K GF + + NAL++
Sbjct: 250 LEFFRRMQMVGIEP-DEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIE 308
Query: 172 MYGKCGNLVDACKVFDEMRGRDIVSWSTMIDVLAMHGCGRRAIDVFDEMERFGIEP 5
MY KCG++ ++FD+M+ RD++SWSTMI LA HG R AI++F EM++ IEP
Sbjct: 309 MYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEP 364
Score = 76.6 bits (187), Expect = 2e-12
Identities = 44/104 (42%), Positives = 60/104 (57%), Gaps = 2/104 (1%)
Frame = -1
Query: 307 DEFSLVSVSSACANMGALVLGKWVHGLVCKTGFCDVVPLGNALVDMYGKCGNLVDACKVF 128
D+F+ V +CA + LGK VHG V K G + N+LV+MY KC +L DA +VF
Sbjct: 161 DKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVF 220
Query: 127 DEMRGRD--IVSWSTMIDVLAMHGCGRRAIDVFDEMERFGIEPD 2
+EM RD I SW+ ++ A GC A++ F M+ GIEPD
Sbjct: 221 EEMTERDATIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPD 264
>ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
[Vitis vinifera]
Length = 537
Score = 115 bits (288), Expect = 4e-24
Identities = 56/116 (48%), Positives = 82/116 (70%)
Frame = -1
Query: 352 LEYFKQMRILCVDSFDEFSLVSVSSACANMGALVLGKWVHGLVCKTGFCDVVPLGNALVD 173
LE+F++M+++ ++ DE SLVSV CA +GAL LGKW+H K GF + + NAL++
Sbjct: 234 LEFFRRMQMVGIEP-DEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIE 292
Query: 172 MYGKCGNLVDACKVFDEMRGRDIVSWSTMIDVLAMHGCGRRAIDVFDEMERFGIEP 5
MY KCG++ ++FD+M+ RD++SWSTMI LA HG R AI++F EM++ IEP
Sbjct: 293 MYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEP 348
Score = 73.9 bits (180), Expect = 1e-11
Identities = 42/95 (44%), Positives = 57/95 (60%)
Frame = -1
Query: 307 DEFSLVSVSSACANMGALVLGKWVHGLVCKTGFCDVVPLGNALVDMYGKCGNLVDACKVF 128
D+F+ V +CA + LGK VHG V K G + N+LV+MY KC +L DA +VF
Sbjct: 116 DKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVF 175
Query: 127 DEMRGRDIVSWSTMIDVLAMHGCGRRAIDVFDEME 23
+EM RD VSW+T+I G RRA +F+EM+
Sbjct: 176 EEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQ 210
>ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223544410|gb|EEF45931.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 517
Score = 113 bits (283), Expect = 1e-23
Identities = 54/117 (46%), Positives = 80/117 (68%)
Frame = -1
Query: 352 LEYFKQMRILCVDSFDEFSLVSVSSACANMGALVLGKWVHGLVCKTGFCDVVPLGNALVD 173
L+ F++M+I ++ DE S++SV ACA +GAL GKW+H + G + NAL++
Sbjct: 212 LDVFREMQIAGIEP-DEASIISVLPACAKLGALETGKWIHMFCARNGLLRRTCICNALIE 270
Query: 172 MYGKCGNLVDACKVFDEMRGRDIVSWSTMIDVLAMHGCGRRAIDVFDEMERFGIEPD 2
MY KCG + AC++FD+MRGRD++SWSTMI LA HG R AI +F+ M++ I+P+
Sbjct: 271 MYTKCGCIDQACQLFDQMRGRDVISWSTMIGGLANHGKVREAIAIFERMKQTNIKPN 327
Score = 74.3 bits (181), Expect = 9e-12
Identities = 43/94 (45%), Positives = 53/94 (56%)
Frame = -1
Query: 307 DEFSLVSVSSACANMGALVLGKWVHGLVCKTGFCDVVPLGNALVDMYGKCGNLVDACKVF 128
DEF+ V ACA +G LGK VH K G + NAL+DMY KC NL+DA +F
Sbjct: 94 DEFTFPFVVKACARLGLHNLGKQVHAQFFKFGKKSHLITENALIDMYTKCDNLLDAHNLF 153
Query: 127 DEMRGRDIVSWSTMIDVLAMHGCGRRAIDVFDEM 26
DEM R +SW+ +I G RRA +FDEM
Sbjct: 154 DEMHERGAISWNGIISGHVRLGQMRRARALFDEM 187
>ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
[Vitis vinifera]
Length = 576
Score = 113 bits (282), Expect = 2e-23
Identities = 51/114 (44%), Positives = 81/114 (71%)
Frame = -1
Query: 343 FKQMRILCVDSFDEFSLVSVSSACANMGALVLGKWVHGLVCKTGFCDVVPLGNALVDMYG 164
F++M++ V+ DE ++++ SACA++GAL LG+W+H + K G +VPL NAL+DMY
Sbjct: 259 FRRMQLEEVEP-DEIAMLAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYA 317
Query: 163 KCGNLVDACKVFDEMRGRDIVSWSTMIDVLAMHGCGRRAIDVFDEMERFGIEPD 2
KCG + A +VF M + +++W++MID LA+HG GR A+++F MER I+P+
Sbjct: 318 KCGKIEKALEVFKNMEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPN 371